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Report for Sequence Feature Glyma09g36700

Feature Type:gene_model
Chromosome:Gm09
Start:42364754
stop:42369682
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G43640AT Annotation by Michelle Graham. TAIR10: Signal recognition particle, SRP9/SRP14 subunit | chr2:18097614-18098619 REVERSE LENGTH=121 SoyBaseE_val: 5.00E-58ISS
GO:0006605GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting SoyBaseN/AISS
GO:0006614GO-bp Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane SoyBaseN/AISS
GO:0045900GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of translational elongation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005786GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting SoyBaseN/AISS
GO:0048500GO-cc Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0008312GO-mf Annotation by Michelle Graham. GO Molecular Function: 7S RNA binding SoyBaseN/AISS
GO:0030942GO-mf Annotation by Michelle Graham. GO Molecular Function: endoplasmic reticulum signal peptide binding SoyBaseN/AISS
KOG1761 KOG Signal recognition particle, subunit Srp14 JGI ISS
PTHR12013Panther SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN JGI ISS
PF02290PFAM Signal recognition particle 14kD protein JGI ISS
UniRef100_G7ZWF3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle 14 kDa protein n=1 Tax=Medicago truncatula RepID=G7ZWF3_MEDTR SoyBaseE_val: 2.00E-63ISS
UniRef100_I1L5R5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5R5_SOYBN SoyBaseE_val: 2.00E-80ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g36700 not represented in the dataset

Glyma09g36700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma12g00660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g232500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g36700.1   sequence type=CDS   gene model=Glyma09g36700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTTCTACAGCTAGATCCGTTTCTCAATGAGCTCACCAGCATGTTTGAGCGCAGCACTAAGCTTGGCTCTGTTTGGGTTACTCTTAAACGATCATCTTTGAAATCTAAGGTGCAGAGGAATAAATTGGCCGCTGCCGGTGAAGCAATTGAGTTTAGATGCCTTATACGTGCAACTGATGGGAAAAAGACAATTTCTACTTCGGTTGGACCGAAGGATCACCAGCGCTTTCAAGCTTCTTATGCAACTATCTTAAAGGCACATATGACTGCTCTAAAGAAGAGAGAAAGGAAAGACAAGAAGAAGCCTGCAGAGGCAGATAAAAGAGAAGGGAGTTCAAAGAGACTGAAGAAGTCTTAA

>Glyma09g36700.1   sequence type=predicted peptide   gene model=Glyma09g36700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLQLDPFLNELTSMFERSTKLGSVWVTLKRSSLKSKVQRNKLAAAGEAIEFRCLIRATDGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKPAEADKREGSSKRLKKS*







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