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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25280 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12939068-12940723 REVERSE LENGTH=249 | SoyBase | E_val: 3.00E-99 | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
| GO:0046939 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide phosphorylation | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016776 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, phosphate group as acceptor | SoyBase | N/A | ISS |
| GO:0019205 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleobase-containing compound kinase activity | SoyBase | N/A | ISS |
| KOG3079 | KOG | Uridylate kinase/adenylate kinase | JGI | ISS | |
| PTHR23359 | Panther | ADENYLATE KINASE | JGI | ISS | |
| PF00406 | PFAM | Adenylate kinase | JGI | ISS | |
| UniRef100_I1L5R3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Adenylate kinase 12 n=1 Tax=Glycine max RepID=I1L5R3_SOYBN | SoyBase | E_val: 1.00E-169 | ISS |
| UniRef100_I1L5R3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenylate kinase 12 n=1 Tax=Glycine max RepID=I1L5R3_SOYBN | SoyBase | E_val: 1.00E-169 | ISS |
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Glyma09g36680 not represented in the dataset |
Glyma09g36680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g00680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g232300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36680.3 sequence type=transcript gene model=Glyma09g36680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATAGTACAAGTCAATTAAAAAAAAAAAAAGAGAAAAGGAAAATGAAATAATTCTGAATCTGATGTGACCTCTCTTTCTCTAAAACATTATAAGAAAGCCCTCACTCACTTCTCTTGAGTCACCTGAACTGACTTGTTGAGAGAAATAGAAAATGTGGAGGCGTGCAACCCTTTTCCTTCGCGTCCTGGAACCTCCTATACACATCAACGCTTCGCTTTCCCAAACATTTACCACTGGATTCCCCTTCCACTTCCAGGAAAAGGATGGCATTTGCCCCAAACCGCTTATAACTTTTGTTTTAGGAGGCCCTGGTAGTGGAAAAGGTACACAGTGTGGAAAAATTGTTGAAACCTTTGGATTTAAGCATCTGAGTGCTGGAGATCTTTTGAGAAGGGAGATGGTTTCTGATAGTGAATATGGCTCAATGATTATGAATACAATTGGAGAAGGAAGAATTGTTCCATCAGAAGTGACTGTCAAATTGATTCTAAGAGAGATGGAATCTAGTGACAATCATAAGTTTCTTATCGATGGCTTCCCTAGAAGCCAGGAGAACCGTATAGCTTTTGAACAAATTATTGGAGCTGAACCGCATATGGTACTTTTCTTTGATTGTCCTGAAGAAGAAATGGTGAAACGTGTGCTGAGTCGTAATCAGGGTCGAATTGATGACAACATAAATACAATCAAGAACCGTCTTCAAGTATTTGAGTCATTAAATCTTCCCGTGATTGACTATTATGCTAAGAAAGGGAAACTTTACAGGATCAATGCAGTGGGAACAGTAGATGAAATTTTTGAGCATGTTCGACCAGTTTTTGAGGCATGTGAGCACGAGGCTAGATGATAGCTGTTTGAATTGGATGAGAGCACTGTAAAGTTGGCTAATGTTTGGATTTAGTGGGGACCCATCATAGTTACCAGTTGATTACAGGATCTGATCCGAATTCATAGCTGATTTGCTTTGGAATTTGGTAGATCTCTAAAACTCATCCGCTGAAGTATTTCAAAATGATATTACACATGTCCACCTTTCACAGGAGATGGCTCTTGTTGCCTTTTTTTTTTTTTTCTTTTCCTCCTTATAATGCCTAACGTGCAGTGAGCTTATGGTCCCGAGAGAATGGCCTATAGGTGGAGCAAAACCGTCTCTAGCAACATAGGAAGTGCTTATAATGCGCAGAATATACCATTAGAAGTATCATATGTTGTGTAACTTTTTTTTTTTTTTTTTTTACAATAAATTGAATTCTAAATGTCAGTCCAACCTCTATCTAGAGGAGTAGAGGTGTAAGTGTTGGGCTATATCCTGATTTTTGTCATCGCACAGATATTGTGAACTAGTTGGTCTTTCGCAGTGACCAAGCTAATTAGACACATAATGGTAGAGTTGGAAAGCCTTGGACTAATTTTAGACCCCACTCCCAATTGTTGCATGGAAAACCTTCTCTAGCAAACTTGCTAGTAAGCACTAAGCATTTAATGAATTGAGACCTTTTTGCCGTGTGTAGTTCTAACCGTGGCACATAAAAACGAATATTAGACATGTTATTAGAGAAGAACCTTCATAGGATGAAGTTAGCTGCAGATTAATATATTGAAATTTGCGCGATACATGAATAACTGAAGGATTCTAAGTTTATACTGCTGCAATTTGAT
>Glyma09g36680.2 sequence type=CDS gene model=Glyma09g36680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGGAAAAGGATGGCATTTGCCCCAAACCGCTTATAACTTTTGTTTTAGGAGGCCCTGGTAGTGGAAAAGGTACACAGTGTGGAAAAATTGTTGAAACCTTTGGATTTAAGCATCTGAGTGCTGGAGATCTTTTGAGAAGGGAGATGGTTTCTGATAGTGAATATGGCTCAATGATTATGAATACAATTGGAGAAGGAAGAATTGTTCCATCAGAAGTGACTGTCAAATTGATTCTAAGAGAGATGGAATCTAGTGACAATCATAAGTTTCTTATCGATGGCTTCCCTAGAAGCCAGGAGAACCGTATAGCTTTTGAACAAATTATTGGAGCTGAACCGCATATGGTACTTTTCTTTGATTGTCCTGAAGAAGAAATGGTGAAACGTGTGCTGAGTCGTAATCAGGGTCGAATTGATGACAACATAAATACAATCAAGAACCGTCTTCAAGTATTTGAGTCATTAAATCTTCCCGTGATTGACTATTATGCTAAGAAAGGGAAACTTTACAGGATCAATGCAGTGGGAACAGTAGATGAAATTTTTGAGCATGTTCGACCAGTTTTTGAGGCATGTGAGCACGAGGCTAGATGA >Glyma09g36680.3 sequence type=CDS gene model=Glyma09g36680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGAGGCGTGCAACCCTTTTCCTTCGCGTCCTGGAACCTCCTATACACATCAACGCTTCGCTTTCCCAAACATTTACCACTGGATTCCCCTTCCACTTCCAGGAAAAGGATGGCATTTGCCCCAAACCGCTTATAACTTTTGTTTTAGGAGGCCCTGGTAGTGGAAAAGGTACACAGTGTGGAAAAATTGTTGAAACCTTTGGATTTAAGCATCTGAGTGCTGGAGATCTTTTGAGAAGGGAGATGGTTTCTGATAGTGAATATGGCTCAATGATTATGAATACAATTGGAGAAGGAAGAATTGTTCCATCAGAAGTGACTGTCAAATTGATTCTAAGAGAGATGGAATCTAGTGACAATCATAAGTTTCTTATCGATGGCTTCCCTAGAAGCCAGGAGAACCGTATAGCTTTTGAACAAATTATTGGAGCTGAACCGCATATGGTACTTTTCTTTGATTGTCCTGAAGAAGAAATGGTGAAACGTGTGCTGAGTCGTAATCAGGGTCGAATTGATGACAACATAAATACAATCAAGAACCGTCTTCAAGTATTTGAGTCATTAAATCTTCCCGTGATTGACTATTATGCTAAGAAAGGGAAACTTTACAGGATCAATGCAGTGGGAACAGTAGATGAAATTTTTGAGCATGTTCGACCAGTTTTTGAGGCATGTGAGCACGAGGCTAGATGA
>Glyma09g36680.2 sequence type=predicted peptide gene model=Glyma09g36680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQEKDGICPKPLITFVLGGPGSGKGTQCGKIVETFGFKHLSAGDLLRREMVSDSEYGSMIMNTIGEGRIVPSEVTVKLILREMESSDNHKFLIDGFPRSQENRIAFEQIIGAEPHMVLFFDCPEEEMVKRVLSRNQGRIDDNINTIKNRLQVFESLNLPVIDYYAKKGKLYRINAVGTVDEIFEHVRPVFEACEHEAR* >Glyma09g36680.3 sequence type=predicted peptide gene model=Glyma09g36680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWRRATLFLRVLEPPIHINASLSQTFTTGFPFHFQEKDGICPKPLITFVLGGPGSGKGTQCGKIVETFGFKHLSAGDLLRREMVSDSEYGSMIMNTIGEGRIVPSEVTVKLILREMESSDNHKFLIDGFPRSQENRIAFEQIIGAEPHMVLFFDCPEEEMVKRVLSRNQGRIDDNINTIKNRLQVFESLNLPVIDYYAKKGKLYRINAVGTVDEIFEHVRPVFEACEHEAR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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