SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G61500 | AT | Annotation by Michelle Graham. TAIR10: autophagy 3 (APG3) | chr5:24734216-24736711 REVERSE LENGTH=313 | SoyBase | E_val: 3.00E-177 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2981 | KOG | Protein involved in autophagocytosis during starvation | JGI | ISS | |
| PTHR12866 | Panther | AUTOPHAGOCYTOSIS PROTEIN AUT1-RELATED | JGI | ISS | |
| PF03986 | PFAM | Autophagocytosis associated protein (Atg3), N-terminal domain | JGI | ISS | |
| PF03987 | PFAM | Autophagocytosis associated protein, active-site domain | JGI | ISS | |
| PF10381 | PFAM | Autophagocytosis associated protein C-terminal | JGI | ISS | |
| UniRef100_I1L5P8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Autophagy-related protein 3 n=1 Tax=Glycine max RepID=I1L5P8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q4QXL9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Autophagy protein ATG3 (Fragment) n=1 Tax=Nicotiana benthamiana RepID=Q4QXL9_NICBE | SoyBase | E_val: 2.00E-88 | ISS |
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Glyma09g36540 not represented in the dataset |
Glyma09g36540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g00830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g231000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36540.1 sequence type=CDS gene model=Glyma09g36540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCTGACTCAGAAGATTCACGAAGCTTTCAAAGGCACCGTCGAGAGGATCACTGGCCCCCGAACCGTTTCCGCCTTCAAAGAAAAAGGAGTTCTCAGTGTCTCCGAGTTCGTCACCGCCGGCGATAATCTCGTTGCCAAATGCCCCACCTGGTCCTGGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAAGAATATGAAGCTGCTGGAGGGGAAGTTTTACTAGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCTAAAGAGAGAAGTTGGGAAGAGATGTCTGAAGAGCAGTCATGCTGCTGCACAGTAGTGTCATCACATTTTCAGTATACATTTGAGATTTTGGGTGCCACTCTTCAGTCCACATATCTAGTCGCTCATGAACCTGATGATGATAATATTCTTCGAACCCGAACTTACGATGTCAGTATCACGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGATGAGTCGAGAATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGATCATGCACACAAAACGGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATCCATGTCGACATGGAGCAGTGATGAAGAAAATCATTGATGTGTTGATGTCACACGGAGTTGAGCCTGAAGTTGACAAGTACCTATTTTTATTCCTAAAATTTATGGCTTCTGTAATTCCAACAATTGAGTATGATTATACCATGGACTTTGATCTTGGTAGCTCCAGCCATTGA
>Glyma09g36540.1 sequence type=predicted peptide gene model=Glyma09g36540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLTQKIHEAFKGTVERITGPRTVSAFKEKGVLSVSEFVTAGDNLVAKCPTWSWESGDPGKRKPYLPPEKQFLITRNVPCLRRAASVEEEYEAAGGEVLLDDEDNDGWLATHGKPKERSWEEMSEEQSCCCTVVSSHFQYTFEILGATLQSTYLVAHEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQDHAHKTVTIEDHPHLPGKHASIHPCRHGAVMKKIIDVLMSHGVEPEVDKYLFLFLKFMASVIPTIEYDYTMDFDLGSSSH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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