SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51300 | AT | Annotation by Michelle Graham. TAIR10: splicing factor-related | chr5:20849881-20852295 REVERSE LENGTH=804 | SoyBase | E_val: 0 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0008380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0119 | KOG | Splicing factor 1/branch point binding protein (RRM superfamily) | JGI | ISS | |
| PTHR11208 | Panther | RNA-BINDING PROTEIN RELATED | JGI | ISS | |
| PTHR11208:SF6 | Panther | KH-DOMAIN RNA BINDING PROTEIN-RELATED | JGI | ISS | |
| PF00013 | PFAM | KH domain | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_I1L5P7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L5P7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LU44 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5G51300 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LU44_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma09g36510 not represented in the dataset |
Glyma09g36510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g00850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g230800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36510.1 sequence type=CDS gene model=Glyma09g36510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGCCCTCGACTCAATCCCAAATCTCCCTCCCCTCCCTCCCTACGATCCATCGGAGTATCACAAACCGCCGCAACATCAATCGGAAACCGGAGAAAACGGTAACGGCACCAAGAACGGCGAACCATCGGAGAACGGCCAGGTCGCCGCCGACAACAACGGCTTGCATCTTCAGATTTCGAAGCCATTGCTCTCCGAAGGAATGACGCGCAGCGGCACTGACAGGGATCAATCCGGCGGCGAGGAGGAGACCACCAGCAAGCGGCGCCGCCGGAGCCGATGGGACCCGCAGCCGGAATCGAACGACCAGAGCGGTGGCGGCGATTCGGGGAGCGGACCGAAGAAGAGGAAATCTCGTTGGGCGGATGACGAGCCGAAACCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAATTCGATCCAGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGAATGTTACAGTCAGGTTTGCCCTTAGATGATCGCCCTGAAGGTGCTCGATCCCCTTCGCCTGAACCTGTATATGATAACATGGGCATTAGAATTAACACTAGGGAATATCGTGCGCGTGAGAGATTGCAAAAAGAGAGGCAGGAAATTATATCTCAGATTATAAAGAAGAACCCTGCATTTAAGCCACCTGCGGATTATAGGCCCCCCAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCTGGTTACAATTTCATTGGGCTTATTATTGGTCCTCGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTCGTGGTAAGGGATCGGTGAAAGAGGGTAGGCTTCAGCAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAAGATTTGCATGTGTTAGTTGAGGCAGAGACACCGGAGTCGCTTGAGGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAGCTTAGGGAGCTTGCTGCGTTGAATGGGACGATCAGGGATGAGGAGTATTGCAGGTTGTGTGGTGAGCCTGGTCATCGCCAATATGCGTGTCCTACTAGGACATCAACGTTTAAGAGTGAAGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAATTTCCTTGCAGAGTTAGGAGGTTCGGTTCCTGAATCTGCAACAAAGCAAACCAGTACATTGGCAATTGGTGCAGGCACTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTACTGTTGGCGGTGCACCTCAAGCAGGCTTAGGGGCTGCTGCAGTAAAGAAGGAAATTGATGATACAAATTTGTATATAGGGTACTTGCCGCCCAATCTTGATGATGATGGCTTGATCCAATTATTTCAACAGTTTGGTGAGATTGTTATGGCGAAAGTTATCAAGGACCGGATGTCGGGTTTAAGTAAAGGATATGGTTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATCCTTGCCATGAATGGTTATCGCCTTGAGGGTCGAACAATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCGGCGTCTGCTGTGCCAACTTATCCTGTTCCAAGTCAGCCACTTGGTGCGTATCCATCCCAACAGTATACTGCTGGTGGCCCCATTGGGACTGCTCCCCCTGGGAGTTACGGTGGTGCCCCAGTGCCATGGGGACCCCCTGTTCCTCCTCCATATGCTTCCTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCACCTATGCAAGGTCAACATATGCCTCCTTATGGGGTTCAATATCCTCCTCCTGTGCCGACTGGCCCTCCCGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAAGTGCAGCAGAGTTACCCACCCGGAGTGCAGTCTGACAACAATAACTCAACTCAGTCTGTACCAGCTAATATGTATGGTAACTCAGGACCTCCAATTCCACCTCAACCTACATATCCTGCATCTTATGGATATCCACCTTACTATAATGCAGTTCCTCCACCACCTCCCCCTTCTGCCCCCATGCCTGTCTCAACTTCAGATCAATCCCACAACATTGCAAATGTGCCTTGGGCCAGTAATTCTCTCGTCCCACCTCCTGCTTCATCAGCAGACAATCAATCCCATAGCATTGGAAATGTGCCTAGGGCCACAAATCCATCAGTGCCTCCTCCTGCTTCATCAGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA
>Glyma09g36510.1 sequence type=predicted peptide gene model=Glyma09g36510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDALDSIPNLPPLPPYDPSEYHKPPQHQSETGENGNGTKNGEPSENGQVAADNNGLHLQISKPLLSEGMTRSGTDRDQSGGEEETTSKRRRRSRWDPQPESNDQSGGGDSGSGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPVYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGAGTSGSNPPWANNSGTVGGAPQAGLGAAAVKKEIDDTNLYIGYLPPNLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYTAGGPIGTAPPGSYGGAPVPWGPPVPPPYASYAPPPPGSTMYPPMQGQHMPPYGVQYPPPVPTGPPGAPSQPATSSEVQQSYPPGVQSDNNNSTQSVPANMYGNSGPPIPPQPTYPASYGYPPYYNAVPPPPPPSAPMPVSTSDQSHNIANVPWASNSLVPPPASSADNQSHSIGNVPRATNPSVPPPASSADSEYEKFMAEMK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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