SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07660 | AT | Annotation by Michelle Graham. TAIR10: structural maintenance of chromosomes 6A | chr5:2422839-2429912 FORWARD LENGTH=1058 | SoyBase | E_val: 0 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0010165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to X-ray | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0051276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome organization | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005694 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000155 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0250 | KOG | DNA repair protein RAD18 (SMC family protein) | JGI | ISS | |
| PTHR19306 | Panther | STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5, SMC6) | JGI | ISS | |
| PTHR19306:SF2 | Panther | gb def: putative nuclear protein of the smc family [encephalitozoon cuniculi] | JGI | ISS | |
| PF02463 | PFAM | RecF/RecN/SMC N terminal domain | JGI | ISS | |
| UniRef100_B9R9U6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Structural maintenance of chromosomes 6 smc6, putative n=1 Tax=Ricinus communis RepID=B9R9U6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338315 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338315 related cluster n=1 Tax=unknown RepID=UPI0002338315 | SoyBase | E_val: 0 | ISS |
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Glyma09g36430 not represented in the dataset |
Glyma09g36430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g00901 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g229900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36430.1 sequence type=CDS gene model=Glyma09g36430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGAATCCAGTTCTAGGGTTTCCCACACTCTTCATCAACCCACCGCAGGCATCGTCAAGCGACTTCGACTCGAGAACTTCATGTGCCATTCCAAACACGAGACCGAGTTCGGAAACCACGTCAATTTCATCACCGGTCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTGTGTGTTGCATTTGGCTGTCGAGCCAAAGGGACTCAAAGGGCTTCCACTTTGAAGGATTTCATTAAAACTGGCGCCACTACTGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTTAAACCTGAAATATATGGTCCTGTTATCATTGTAGAACGTAGGATATCTGAATCCACAAGTTCTACTACTTTAAAAGATCACCAAGGAAGGAAGGTTGTCAGTCGGAAAGCAGATCTTCTAGAAATCGTTGAACATTTTAATATTGACGTGGAGAATCCATGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATAACAAGGATAAATTTAAGTTCTTTTACAAGGCCACGCTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCAATGAAATAACTTCTGCACAATTAGTAGTTGAAGAATTAGAGACTGCAATAAGGCCCATAGAGAATGAGCTTAATGAGCTGCAAGTTAAAATTAGAAATATGGAACATGTTGAACAAATATCCATACAGGTTCAGCAGTTAAAGAAGAAACTTGCATGGTCATGGGTTTATCATGTGGATGAGCAACTGGAGCAACAAAATGTAAAGATTGAAAAGTTGAAGAATCGGATACCTACCTGCCAGGCTAAGATTGATCAACAACTGCATTTAGTTGAAAAGTTGGAGGAAATCTGGTCCAAGAAGAAAGAGGAAATTAAAAGTATGTTTGCAAAGACATCACAAGTTAATCAAATGAAGGAAAATTTAAACCAGTCTGTGTCCATGGCAAAGAAAGAGGCGTTTGAACTTGAGCGAGACTGCAAATGCAAAACCAGCAACATACAGAAGATGGTTAATCAACTTGAAAAGCTTAAAAAACAAGTACAGGATATCCATGATCAGCACGTAAAAAATTCTCAGGCTGAAGAATCTAACATGGAGGAGAAACTGAAGGGGCTTAAAGATGAGGTTCATGCAGCTGAGTCAAAGCTGAAGAGATTGCAAGAAGAAGAAGCTTTGTTACTGGATAACATACATAGGCAAAAGGATGAAATCCGAAAGATAGCTGATAAGATCGATGATCATGAAAAAAGTTATAAAGATTTGATGTGTCAAATTCGTGGTCTTCAACAAAATCAAAGCAATAAGATTACTGTTTTTGGAGGAAATAAAGTGTTAGATTTGTTACGTATAATTGAGAACTACCACCAAAGGTTTAAGATGCCTCCAATTGGTCCCATCGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCGTAGAACATGCTATTGGGAGATTGCTCAATTCTTTTATAGTGACTGATCATGCGGATTGTCGTCTTCTGAAACAATGTGCGAAGGAAGCACACTTTGGTCACCTTCAAATTATTGTTTATGATTTTTCAATCCCAAGGTTGACGATACCACAGCACATGCTTCCTGATACAGAACATCCATCAATTCTTTCTGTCTTACAATGCGAGAATCAAACTGTGATTAATGTCTTAGTGGATCATGGAAATGTTGAGAGACAAGTGCTTGTTAAGGATTATGAAGTTGGGAAAGTGGTTGTCTTTGACCGAAGGATTCGAAATTTGAAGGAGGCCTATACAGAAGATGGATGTAGAATGTTTTGTCGAGGTCCAGTGCAGAATTTTCTTCAACCAAATATGAGGCGAAGAACTGGTCGTCTTTGTGGTTCTTTTGAAGATGAGATTAAGAAACTTCATGCTGAAGCGTCTGATGTAAAAAATGAAGCCAATGGCTGTAAAAATATTAAAAGAAAGGCAGAGATCAAGCTTGAGGAGCTTGACAAGAATATGAATTCTATCAAGAGGCAATGTGTAGATGCAGATAAAAGTTTAACTTCTAAGAAGCTAGTGTTGGAGCAGGAAGAAATGGATTTGTACACTGCTAAAAATAGTGCAACACCTTTATCCTCTGTTGATGAGCTCATTGAAGAAATTTCAGAGATCCAGAAAAAAATAAAAGACGAGAAAGTCTTGTTGGAAGGCCTTCGGCAAAAGGAGTGTGAAGCAGCAGGAAAAGCAGATGATCTTAAAGTCAAATTTGACAAACTGTGTGAATCAGCGAATGGTGAATTTGCTTCCTATGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGATTCAGCAAAAAAGGCAAAGGATCATTATGAGGGTATCATGAAAAACAAGGTCCTACTTGATATTGAGGAGGCAGAGGAACACTATCTGGAGCTTACAAAGATGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATTTGCTCCCTGAATGAACTTGATTCATTAGGCGGTTGTGAAGGGAATACCCCAGAGCAAATCAGTGCACAATTAGAAAGACTAAATCAGACAATTAGGCGTGAGAGCCAAAGGTACTCTGAATCAATCGATGATCTCAGGATGCTGTATAAGAAAAAAGAGCGTAAGATTATAAAAAGGCAGCAAGTTTACAAAACTCTTCGACAGAAATTGGATGCTTGCCAGAGAGCCTTAGAGTTACGAAAGAGAAAGTTTCAGAGAAATGCAACTTATCTGAAGCACCAGCTTTCTTGGAAATTTAATGGCCATTTGAGAAAGAAGGGGATTAGTGGACTTATCAAAGTTAACTATGAAGATAAAACCTTAATGATTGAGGTACAAATGCCACAAGATGCATCAAACAGAGCTGTTCGAGACACTAGGGGGCTTTCAGGTGGCGAGCGCTCTTTTTCAACATTGTGCTTTGCATTGGCGCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTCATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACCCTAGTTGATTTTGCTGAGGCACATGGATCACAGTGGATATTCATTACTCCGCATGATACTAGCTCGGTGAGGGCAGGGGACAGGATAAAGAAGATGCAAATGGCCGCTCCACGTTCTTGA
>Glyma09g36430.1 sequence type=predicted peptide gene model=Glyma09g36430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGESSSRVSHTLHQPTAGIVKRLRLENFMCHSKHETEFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGATTAVIQVEIQNEGEDAFKPEIYGPVIIVERRISESTSSTTLKDHQGRKVVSRKADLLEIVEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISNEITSAQLVVEELETAIRPIENELNELQVKIRNMEHVEQISIQVQQLKKKLAWSWVYHVDEQLEQQNVKIEKLKNRIPTCQAKIDQQLHLVEKLEEIWSKKKEEIKSMFAKTSQVNQMKENLNQSVSMAKKEAFELERDCKCKTSNIQKMVNQLEKLKKQVQDIHDQHVKNSQAEESNMEEKLKGLKDEVHAAESKLKRLQEEEALLLDNIHRQKDEIRKIADKIDDHEKSYKDLMCQIRGLQQNQSNKITVFGGNKVLDLLRIIENYHQRFKMPPIGPIGAHLKLLHGNKWALAVEHAIGRLLNSFIVTDHADCRLLKQCAKEAHFGHLQIIVYDFSIPRLTIPQHMLPDTEHPSILSVLQCENQTVINVLVDHGNVERQVLVKDYEVGKVVVFDRRIRNLKEAYTEDGCRMFCRGPVQNFLQPNMRRRTGRLCGSFEDEIKKLHAEASDVKNEANGCKNIKRKAEIKLEELDKNMNSIKRQCVDADKSLTSKKLVLEQEEMDLYTAKNSATPLSSVDELIEEISEIQKKIKDEKVLLEGLRQKECEAAGKADDLKVKFDKLCESANGEFASYEKAESELVEIEKEMDSAKKAKDHYEGIMKNKVLLDIEEAEEHYLELTKMRKESVEKASIICSLNELDSLGGCEGNTPEQISAQLERLNQTIRRESQRYSESIDDLRMLYKKKERKIIKRQQVYKTLRQKLDACQRALELRKRKFQRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEDKTLMIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSSVRAGDRIKKMQMAAPRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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