SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G63500 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1423) | chr3:23446331-23449991 REVERSE LENGTH=1162 | SoyBase | E_val: 0 | ISS |
| GO:0001708 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell fate specification | SoyBase | N/A | ISS |
| GO:0009880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification | SoyBase | N/A | ISS |
| GO:0090421 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic meristem initiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR21736 | Panther | VERNALIZATION-INSENSITIVE PROTEIN 3 | JGI | ISS | |
| PTHR21736:SF16 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07227 | PFAM | Protein of unknown function (DUF1423) | JGI | ISS | |
| UniRef100_G7JTL7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein VERNALIZATION INSENSITIVE n=1 Tax=Medicago truncatula RepID=G7JTL7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023382EC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023382EC related cluster n=1 Tax=unknown RepID=UPI00023382EC | SoyBase | E_val: 0 | ISS |
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Glyma09g36230 not represented in the dataset |
Glyma09g36230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g01100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g228100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36230.2 sequence type=CDS gene model=Glyma09g36230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGATTGAGGTCGAGCGAGGATCTCTACTCCTACGGCGGAGATAAGAGTAATAATAGTTGCAAGGATTCGAACAATCTTAACCGTTCGTTTTCGTCGGCGCAGCGGAGCTTCTACTACAAGCAGGAGAATGCGCGCAAGGGTTTGGTCTCGTCGTCTTCGTCGTCGTCATCACGGTACGAGAGGGATCGAACGGTGGAGGAGGATCGGGAGGGTTCGCGGCTGGTTCGGAAGCGATCGGAGCACGATTTCGAGGGTTTCGATCGGAGGAAGGGGTTCGATCGGTACAGGGAGAGTGACCGGAGTTTGATTCACCGGTCGGAGAGTTTCTGCGGCGGTGGAGGGTTGCGGAGGGATCAGTTTCCGAAGGGGTTTCGGTCGGAGAGGGAGCGATCGCGGAGGGAGGGGAGCGTGTCGTCGTGGCGGCGAGGGTTGAAGGATTTTGATGATAGAGAGAGGGTGGTGCGTTCTCCCAAGGGTTTGAGGGATGTGAAGTCTCCGTCGTGGTCGAAGGATTCTGTTTCTGAGAGCGAGCAATCGAAGAAGAGGTCTTCTTCTTCTCCGAGACCATTCAGAGATGGTAACTCCGTCAAGTCTAAGTCCAAGTCTCCCACTTGGTCCAAGGATTCGGAGAGCGAGCTGTCCAAGAGTGTTGAGGTGAAGAAGGTTGAGGAGGAGTTGTTGCAGCAGGTTCAGAGTGGGAGTGGGAGTGGGAGTGGTAGTGAGATGGAAGAAGGGGAGCTTGAGCCTGAACCCCAAGCGGAAACGGTTCCTCCTGTGACTGAAGGCCTGCCCTCTGTTGCTATGGAGACTGATGAGAAGCAAGTTCAGAAGAATGAATGCCACCCTAATGATGGTGACACTGATGCTGCTGTGGAGGAGGAAGGGAAACCTAACGAGGAGGATGGATGTTGTGAGGTAAAGGATGGAGAGAAGAAGAAAGAAGCTGATGAGATGGCAGATGTTCGGGATTATCAGACTGAGAAAATGCTTGTGACTGAGACTGAAGTTGAGTCTGTGGGTAATGGTGATGATGATAAAAAGGAGGAGGCTTTGGATGCTGGTGCTGAGTATGAGGAGGAAACAAAGAAGGGTGCGTGTGTGGAGGAGGAGAAGGAGAAGAAGGTGGCGTTGAATGAAGAGGAGGATAAGAAGGACAAGGGCAAGGACAAGGACAAGGACAAGGGCAAGGGTGTAGATCTAGGAACCAGCACGGATGTTCTCAAACCTGAGTTAAATGATGTAGTATCGACAGGAAATGAGGTTCCAAAGGAAGTGGATAGAGAAATGATGATGGAGAATGTGATCAATATTGCAAAGGATAAAGGCAAAGGTGTCTCTGTTGCACTTGTACCTCCTACTGATGTTGTTCATGCTTTAGATGATGGCTTGTGGTTGGATAGAGAGTCGAGAGACCTCCTGACGTGTTCTGTTGATGTTATAGAAGGTCCAAGCACAAGGGGATTCGAGTTGTTTTCCAGATCTCCTGTTAGGAAAGTGGAGAAAGTAGACCACTCAGTTCTCAACAAGCACAAGGATGACATGGAGCAGCTTGATCTTACTCTTAGCTTGCCGAATGTTCTGTTACCTATTGGTGCTCATGAGACTGGTGCTCATGAGACAACATCGCAAATCCCTGGATCCCCCAGTCAAGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCGATGTCCTTTTCAGGTTCCCAATCATTCTATCATAATCCAAGCTGTTCTCTGACAAAAAATTCAGTGGACTATGAACAATCTGTTGGCAGTCGCCCCTTATTTGGGGGAATAGATCAAGTTTCCCAGGGATGTTGGCAAGGTCAGTCTCAGAGCGATCCCAAACAGAAAGAAGTTCCTTTTGGTCAAAGAACCTCGGCGAATGGAAATGGCTCCCTTTTCCAGTCTCAGGCATCATGGGGTGTTTTAGACAGTCAAGCTGTGAAGGGTCAACATTCCAGGGTTCTAGAAGGAAGTTCAAAAATGGGCAGTGGACTTGACAGGCAATTGAGTTTTCATAAGCAGTTTTCAGGCCAGTCAAGACGCCATGATGATGTTAGATCTCCGTCACAGAGTGTTGGGTCTCATGATATTGGATCAAATTATAGCTTTGAGAAAAAGAGAGAGGTAAGAGACAGGGGTAGTGGTAGTCTGTATCGAACTACCGGCCAGAAGGAACAAGAGCAACTTCTGATGGGTGGAGTTGATTTTGTTGAGACAATCATTGCAAGAATTGTTTCTGAACCTGTTCAAGCAATGTCTAGAAAGTTTCATGAAATGACCGGACAGTCCATAGTATGTCTGAAGGAGGGTATTCGTGAAATCATGCTTAATGCAGATAAGCATGGGCAGATACTTGCTTTTCAAAAAGTTCTGCAGAACAGGTCTGATATAATCTTGGATGTCCTATTGAAGTGCCACCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTGACTCATTTTCTTCACCTGGAGAGCAGCATTTCATCTTCTGAGTTGGCTCAAATTTTTCTGAACTTAAGGTGTAAGAATCTTTCATGTCGAAGTCAGTTGCCTGTGGACGAATGTGATTGCAAGGTTTGTGCAAAGAAGAATGGTTTTTGCAGGGAGTGTATGTGCCTTGTGTGTTCAAAGTTTGATAATGCCTCAAATACATGTAGTTGGGTTGGATGTGATGTTTGCCTTCACTGGTGCCATACTGACTGTGGATTACGGGAATCTTATATTAGAAATGGGCATGGGACAAAAGGGATGACCGAGATGCAGTTTCACTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTTGCAAAAGAATGGTCAGTTGAAACACTTTGCAAAGAGCTTGAATATGTAAAAAGAATTTTTTCTGCCAGCAAGGATATGAGAGGGAGACGGTTGCATGAGATTGCAGAGCAAATGCTGCCAAGGTTGGCAAATAAGTCTAATCTCCCTGAGGTTTTGAGGCACATCATGTCTTTTCTTTCGGATGGTGATTCTTCCAAATTACCCATGACAACAAACTTTTCTGGGAAGGAACAAATTAAAGAAAACAATGGAGTAGCTGGGCCCAGCCCGGAAGCAGCTTGGATGAAATCTATTTATTCAGAAAAGCCACCTCTGTTAGAAAGGCCTGCAAATATCCTTCCTACCTTCGACCAGAATGATAAAAGAACTCTTGTGCAAGAATTTCAGATGAGTAGTATCCAGAAGGACTTCTGTTTTGATGAATTGGAGAGTATAGTAAAAATTAAACAGGCAGAGGCTAAAATGTTTCAATCACGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTGAAGCTCATTGCCCTTGCCAAGAATGAGAAAATTGAGGAAGAATATACCAATAGAATTGCCAAGTTGCGATTGACTGAGACTGATGAAATTCGTAAACAAAAATTTGAAGAAGCCCAAGCATTAGAGAGGGCACATCTGGAGTATTTGAACATGAAAATGAGAATGGAGACAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACCAAAACGAGCCTTGCCATGTGA
>Glyma09g36230.2 sequence type=predicted peptide gene model=Glyma09g36230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRLRSSEDLYSYGGDKSNNSCKDSNNLNRSFSSAQRSFYYKQENARKGLVSSSSSSSSRYERDRTVEEDREGSRLVRKRSEHDFEGFDRRKGFDRYRESDRSLIHRSESFCGGGGLRRDQFPKGFRSERERSRREGSVSSWRRGLKDFDDRERVVRSPKGLRDVKSPSWSKDSVSESEQSKKRSSSSPRPFRDGNSVKSKSKSPTWSKDSESELSKSVEVKKVEEELLQQVQSGSGSGSGSEMEEGELEPEPQAETVPPVTEGLPSVAMETDEKQVQKNECHPNDGDTDAAVEEEGKPNEEDGCCEVKDGEKKKEADEMADVRDYQTEKMLVTETEVESVGNGDDDKKEEALDAGAEYEEETKKGACVEEEKEKKVALNEEEDKKDKGKDKDKDKGKGVDLGTSTDVLKPELNDVVSTGNEVPKEVDREMMMENVINIAKDKGKGVSVALVPPTDVVHALDDGLWLDRESRDLLTCSVDVIEGPSTRGFELFSRSPVRKVEKVDHSVLNKHKDDMEQLDLTLSLPNVLLPIGAHETGAHETTSQIPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSFYHNPSCSLTKNSVDYEQSVGSRPLFGGIDQVSQGCWQGQSQSDPKQKEVPFGQRTSANGNGSLFQSQASWGVLDSQAVKGQHSRVLEGSSKMGSGLDRQLSFHKQFSGQSRRHDDVRSPSQSVGSHDIGSNYSFEKKREVRDRGSGSLYRTTGQKEQEQLLMGGVDFVETIIARIVSEPVQAMSRKFHEMTGQSIVCLKEGIREIMLNADKHGQILAFQKVLQNRSDIILDVLLKCHRVQLEILVALKTGLTHFLHLESSISSSELAQIFLNLRCKNLSCRSQLPVDECDCKVCAKKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHGTKGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSVETLCKELEYVKRIFSASKDMRGRRLHEIAEQMLPRLANKSNLPEVLRHIMSFLSDGDSSKLPMTTNFSGKEQIKENNGVAGPSPEAAWMKSIYSEKPPLLERPANILPTFDQNDKRTLVQEFQMSSIQKDFCFDELESIVKIKQAEAKMFQSRADDARREAEGLKLIALAKNEKIEEEYTNRIAKLRLTETDEIRKQKFEEAQALERAHLEYLNMKMRMETDIKDLLSKMEATKTSLAM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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