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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G08030 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF642 | chr3:2564191-2565819 FORWARD LENGTH=365 | SoyBase | E_val: 3.00E-173 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009740 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF04862 | PFAM | Protein of unknown function, DUF642 | JGI | ISS | |
| UniRef100_I1L5M2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1L5M2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SFB1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F17A17.37 protein n=3 Tax=Arabidopsis thaliana RepID=Q9SFB1_ARATH | SoyBase | E_val: 1.00E-170 | ISS |
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Glyma09g36220 not represented in the dataset |
Glyma09g36220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g01110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g228000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36220.2 sequence type=transcript gene model=Glyma09g36220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAACAAACTTGCAATTCACTGCACTGCATAGATGGAAAAAGCATGGAAAGAGGCGCATTGTTAGCAACGTGTGGTCTGCTGTTGCAGCATAAAACGGAGTAGAGCTTCATCCTCTGCTCTTGCACACTAAGACCCTTCTCTTCCTTAGCAACCCCACTTCTTAGTTACACATCCACATTTGCTTGTCTTGTTTAGGTGGTTGGTGAGAATGTCAGAGACATTCATATTCACACTTTCTCTGGTTATGCTATGTGCTGCTTCAGCTTTTGCAGCAGTTCCACACAGGTTGCCAGAAGGTGATGCTCTCTTTTGATGCCCTTTCATATATTCTGATGACCACATTATATTAAGCATTTTCCATTATAATGTGCTAGTGTGCTTTGATTCTGATACTTGACATATGTTACAATTTTCACATGTAATATAACATCTTGTGCTTGACAGTTTACCTCAAGAATGGTAACTTTGAGGAGAATCCAAACCCCAAATACCTCAAGAAAACGACACTGATTGGGAAATATGCTCTTCCAAAATGGGAGATCAGTGGTCATGTTGAGTATGTCTCAGGGGGGCCACAACCTGGGGGTATGTACTTCCCAGTTAGTCATGGAGTGCATGCTGTGAGGCTTGGAAATGAGGCCTCAATCTCACAAACCATTAAGGTCAAACCTGGCAAGTGGTACGCTCTAATTCTAGGAGCCTCAAGGACTTGTGCTCAAGATGAGGTTTTAAGGATCTCAGTGCCTCCACAATCTGGAGAGGTTCCTTTGCAGACCCTTTATAGCCTCAATGGTGATGTTATCGCTTGGGGTTTCCGTCCCACTTCTTCTGTTGCCAAAGTGATACTCCACAACCCTGGAATTCAAGAAGACCCTGCCTGTGGTCCACTCTTGGATGCCGTTGCTATCGCAGAATTCTGCCCTCCAAAGCCTACAAGAGCTAATTTGGTTAAAAATCCGGGGTTTGAGGTGGGTCCATTCCCTATTTTCAACTCTACAAACGGTGTTCTACTTCCTCCCGAACAAGAAGATCATGTGTCTCCACTCCCTGGTTGGATGATTGAATCCCTCAAAGCCGTGAAGTTCATAGATGCAAAACATTTCAATGTACCATTTGGACAGGGAGCAGTAGAACTTATTGCAGGCAGGGAAAGTGTCATTGCCCAAATTCTCAGAACAGTTCCCAACAAAATTTACAACATGAAGTTCACAATTGGAGACGCCAGAAATGGTTGTCATGGATCAATGATGATTGAAGCGTTTGCAGCAAAAGATACCCTCAAAGTTCCCTTCAAATCTGAGGGAAAGGGCGAATTCAAGACTGTGAGTTTCAAGTTCAGAGCGATTGAAAACAGAACAAGAATCACATTCTATAGCTCCTTCTACCATACAAGAATTCATGACTACGGATCTCTTTGTGGCCCTGTTATTGATCAAGTTATAGTGTATCCTGTCGCCTGAACACTGCTTTTACCATACCTAATACTAGTGATTTATAGTTTGCATTGTATGAGAAGATGAAAAATATTGTGTCGGTCTTGGTGACTAAATTTATCCTTTCCTTTTCTTCCTGTAACACATGAGAATTTCAATAAAATGATGTTTTGGAAGTATGGACTTCCTCGAAGAG >Glyma09g36220.3 sequence type=transcript gene model=Glyma09g36220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATTTTGACACTTATATATGAAAATTTAAGAAAACCCCATGTTCATCCATTAAATATTTGAAGTCTACATTTTATTTAATAAAACAAACTTGCAATTCACTGCACTGCATAGATGGAAAAAGCATGGAAAGAGGCGCATTGTTAGCAACGTGTGGTCTGCTGTTGCAGCATAAAACGGAGTAGAGCTTCATCCTCTGCTCTTGCACACTAAGACCCTTCTCTTCCTTAGCAACCCCACTTCTTAGTTACACATCCACATTTGCTTGTCTTGTTTAGGTGGTTGGTGAGAATGTCAGAGACATTCATATTCACACTTTCTCTGGTTATGCTATGTGCTGCTTCAGCTTTTGCAGCAGTTCCACACAGGTTGCCAGAAGTTTACCTCAAGAATGGTAACTTTGAGGAGAATCCAAACCCCAAATACCTCAAGAAAACGACACTGATTGGGAAATATGCTCTTCCAAAATGGGAGATCAGTGGTCATGTTGAGTATGTCTCAGGGGGGCCACAACCTGGGGGTATGTACTTCCCAGTTAGTCATGGAGTGCATGCTGTGAGGCTTGGAAATGAGGCCTCAATCTCACAAACCATTAAGGTCAAACCTGGCAAGTGGTACGCTCTAATTCTAGGAGCCTCAAGGACTTGTGCTCAAGATGAGGTTTTAAGGATCTCAGTGCCTCCACAATCTGGAGAGGTTCCTTTGCAGACCCTTTATAGCCTCAATGGTGATGTTATCGCTTGGGGTTTCCGTCCCACTTCTTCTGTTGCCAAAGTGATACTCCACAACCCTGGAATTCAAGAAGACCCTGCCTGTGGTCCACTCTTGGATGCCGTTGCTATCGCAGAATTCTGCCCTCCAAAGCCTACAAGAGCTAATTTGGTTAAAAATCCGGGGTTTGAGGTGGGTCCATTCCCTATTTTCAACTCTACAAACGGTGTTCTACTTCCTCCCGAACAAGAAGATCATGTGTCTCCACTCCCTGGTTGGATGATTGAATCCCTCAAAGCCGTGAAGTTCATAGATGCAAAACATTTCAATGTACCATTTGGACAGGGAGCAGTAGAACTTATTGCAGGCAGGGAAAGTGTCATTGCCCAAATTCTCAGAACAGTTCCCAACAAAATTTACAACATGAAGTTCACAATTGGAGACGCCAGAAATGGTTGTCATGGATCAATGATGATTGAAGCGTTTGCAGCAAAAGATACCCTCAAAGTTCCCTTCAAATCTGAGGGAAAGGGCGAATTCAAGACTGTGAGTTTCAAGTTCAGAGCGATTGAAAACAGAACAAGAATCACATTCTATAGCTCCTTCTACCATACAAGAATTCATGACTACGGATCTCTTTGTGGCCCTGTTATTGATCAAGTTATAGTGTATCCTGTCGCCTGAACACTGCTTTTACCATACCTAATACTAGTGATTTATAGTTTGCATTGTATGAGAAGATGAAAAATATTGTGTCGGTCTTGGTGACTAAATTTATCCTTTCCTTTTCTTCCTGTAACACATGAGAATTTCAATAAAATGATGTTTTGGAAGTATGGACTTCCTCGAAGAGTATACTTGCACA
>Glyma09g36220.1 sequence type=CDS gene model=Glyma09g36220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAGAGGCGCATTGTTAGCAACGTGTGGTCTGCTGTTGCAGCATAAAACGGAGTGGTTGGTGAGAATGTCAGAGACATTCATATTCACACTTTCTCTGGTTATGCTATGTGCTGCTTCAGCTTTTGCAGCAGTTCCACACAGGTTGCCAGAAGTTTACCTCAAGAATGGTAACTTTGAGGAGAATCCAAACCCCAAATACCTCAAGAAAACGACACTGATTGGGAAATATGCTCTTCCAAAATGGGAGATCAGTGGTCATGTTGAGTATGTCTCAGGGGGGCCACAACCTGGGGGTATGTACTTCCCAGTTAGTCATGGAGTGCATGCTGTGAGGCTTGGAAATGAGGCCTCAATCTCACAAACCATTAAGGTCAAACCTGGCAAGTGGTACGCTCTAATTCTAGGAGCCTCAAGGACTTGTGCTCAAGATGAGGTTTTAAGGATCTCAGTGCCTCCACAATCTGGAGAGGTTCCTTTGCAGACCCTTTATAGCCTCAATGGTGATGTTATCGCTTGGGGTTTCCGTCCCACTTCTTCTGTTGCCAAAGTGATACTCCACAACCCTGGAATTCAAGAAGACCCTGCCTGTGGTCCACTCTTGGATGCCGTTGCTATCGCAGAATTCTGCCCTCCAAAGCCTACAAGAGCTAATTTGGTTAAAAATCCGGGGTTTGAGGTGGGTCCATTCCCTATTTTCAACTCTACAAACGGTGTTCTACTTCCTCCCGAACAAGAAGATCATGTGTCTCCACTCCCTGGTTGGATGATTGAATCCCTCAAAGCCGTGAAGTTCATAGATGCAAAACATTTCAATGTACCATTTGGACAGGGAGCAGTAGAACTTATTGCAGGCAGGGAAAGTGTCATTGCCCAAATTCTCAGAACAGTTCCCAACAAAATTTACAACATGAAGTTCACAATTGGAGACGCCAGAAATGGTTGTCATGGATCAATGATGATTGAAGCGTTTGCAGCAAAAGATACCCTCAAAGTTCCCTTCAAATCTGAGGGAAAGGGCGAATTCAAGACTGTGAGTTTCAAGTTCAGAGCGATTGAAAACAGAACAAGAATCACATTCTATAGCTCCTTCTACCATACAAGAATTCATGACTACGGATCTCTTTGTGGCCCTGTTATTGATCAAGTTATAGTGTATCCTGTCGCCTGA >Glyma09g36220.2 sequence type=CDS gene model=Glyma09g36220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACTTCCCAGTTAGTCATGGAGTGCATGCTGTGAGGCTTGGAAATGAGGCCTCAATCTCACAAACCATTAAGGTCAAACCTGGCAAGTGGTACGCTCTAATTCTAGGAGCCTCAAGGACTTGTGCTCAAGATGAGGTTTTAAGGATCTCAGTGCCTCCACAATCTGGAGAGGTTCCTTTGCAGACCCTTTATAGCCTCAATGGTGATGTTATCGCTTGGGGTTTCCGTCCCACTTCTTCTGTTGCCAAAGTGATACTCCACAACCCTGGAATTCAAGAAGACCCTGCCTGTGGTCCACTCTTGGATGCCGTTGCTATCGCAGAATTCTGCCCTCCAAAGCCTACAAGAGCTAATTTGGTTAAAAATCCGGGGTTTGAGGTGGGTCCATTCCCTATTTTCAACTCTACAAACGGTGTTCTACTTCCTCCCGAACAAGAAGATCATGTGTCTCCACTCCCTGGTTGGATGATTGAATCCCTCAAAGCCGTGAAGTTCATAGATGCAAAACATTTCAATGTACCATTTGGACAGGGAGCAGTAGAACTTATTGCAGGCAGGGAAAGTGTCATTGCCCAAATTCTCAGAACAGTTCCCAACAAAATTTACAACATGAAGTTCACAATTGGAGACGCCAGAAATGGTTGTCATGGATCAATGATGATTGAAGCGTTTGCAGCAAAAGATACCCTCAAAGTTCCCTTCAAATCTGAGGGAAAGGGCGAATTCAAGACTGTGAGTTTCAAGTTCAGAGCGATTGAAAACAGAACAAGAATCACATTCTATAGCTCCTTCTACCATACAAGAATTCATGACTACGGATCTCTTTGTGGCCCTGTTATTGATCAAGTTATAGTGTATCCTGTCGCCTGA >Glyma09g36220.3 sequence type=CDS gene model=Glyma09g36220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGAGACATTCATATTCACACTTTCTCTGGTTATGCTATGTGCTGCTTCAGCTTTTGCAGCAGTTCCACACAGGTTGCCAGAAGTTTACCTCAAGAATGGTAACTTTGAGGAGAATCCAAACCCCAAATACCTCAAGAAAACGACACTGATTGGGAAATATGCTCTTCCAAAATGGGAGATCAGTGGTCATGTTGAGTATGTCTCAGGGGGGCCACAACCTGGGGGTATGTACTTCCCAGTTAGTCATGGAGTGCATGCTGTGAGGCTTGGAAATGAGGCCTCAATCTCACAAACCATTAAGGTCAAACCTGGCAAGTGGTACGCTCTAATTCTAGGAGCCTCAAGGACTTGTGCTCAAGATGAGGTTTTAAGGATCTCAGTGCCTCCACAATCTGGAGAGGTTCCTTTGCAGACCCTTTATAGCCTCAATGGTGATGTTATCGCTTGGGGTTTCCGTCCCACTTCTTCTGTTGCCAAAGTGATACTCCACAACCCTGGAATTCAAGAAGACCCTGCCTGTGGTCCACTCTTGGATGCCGTTGCTATCGCAGAATTCTGCCCTCCAAAGCCTACAAGAGCTAATTTGGTTAAAAATCCGGGGTTTGAGGTGGGTCCATTCCCTATTTTCAACTCTACAAACGGTGTTCTACTTCCTCCCGAACAAGAAGATCATGTGTCTCCACTCCCTGGTTGGATGATTGAATCCCTCAAAGCCGTGAAGTTCATAGATGCAAAACATTTCAATGTACCATTTGGACAGGGAGCAGTAGAACTTATTGCAGGCAGGGAAAGTGTCATTGCCCAAATTCTCAGAACAGTTCCCAACAAAATTTACAACATGAAGTTCACAATTGGAGACGCCAGAAATGGTTGTCATGGATCAATGATGATTGAAGCGTTTGCAGCAAAAGATACCCTCAAAGTTCCCTTCAAATCTGAGGGAAAGGGCGAATTCAAGACTGTGAGTTTCAAGTTCAGAGCGATTGAAAACAGAACAAGAATCACATTCTATAGCTCCTTCTACCATACAAGAATTCATGACTACGGATCTCTTTGTGGCCCTGTTATTGATCAAGTTATAGTGTATCCTGTCGCCTGA
>Glyma09g36220.1 sequence type=predicted peptide gene model=Glyma09g36220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERGALLATCGLLLQHKTEWLVRMSETFIFTLSLVMLCAASAFAAVPHRLPEVYLKNGNFEENPNPKYLKKTTLIGKYALPKWEISGHVEYVSGGPQPGGMYFPVSHGVHAVRLGNEASISQTIKVKPGKWYALILGASRTCAQDEVLRISVPPQSGEVPLQTLYSLNGDVIAWGFRPTSSVAKVILHNPGIQEDPACGPLLDAVAIAEFCPPKPTRANLVKNPGFEVGPFPIFNSTNGVLLPPEQEDHVSPLPGWMIESLKAVKFIDAKHFNVPFGQGAVELIAGRESVIAQILRTVPNKIYNMKFTIGDARNGCHGSMMIEAFAAKDTLKVPFKSEGKGEFKTVSFKFRAIENRTRITFYSSFYHTRIHDYGSLCGPVIDQVIVYPVA* >Glyma09g36220.2 sequence type=predicted peptide gene model=Glyma09g36220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYFPVSHGVHAVRLGNEASISQTIKVKPGKWYALILGASRTCAQDEVLRISVPPQSGEVPLQTLYSLNGDVIAWGFRPTSSVAKVILHNPGIQEDPACGPLLDAVAIAEFCPPKPTRANLVKNPGFEVGPFPIFNSTNGVLLPPEQEDHVSPLPGWMIESLKAVKFIDAKHFNVPFGQGAVELIAGRESVIAQILRTVPNKIYNMKFTIGDARNGCHGSMMIEAFAAKDTLKVPFKSEGKGEFKTVSFKFRAIENRTRITFYSSFYHTRIHDYGSLCGPVIDQVIVYPVA* >Glyma09g36220.3 sequence type=predicted peptide gene model=Glyma09g36220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSETFIFTLSLVMLCAASAFAAVPHRLPEVYLKNGNFEENPNPKYLKKTTLIGKYALPKWEISGHVEYVSGGPQPGGMYFPVSHGVHAVRLGNEASISQTIKVKPGKWYALILGASRTCAQDEVLRISVPPQSGEVPLQTLYSLNGDVIAWGFRPTSSVAKVILHNPGIQEDPACGPLLDAVAIAEFCPPKPTRANLVKNPGFEVGPFPIFNSTNGVLLPPEQEDHVSPLPGWMIESLKAVKFIDAKHFNVPFGQGAVELIAGRESVIAQILRTVPNKIYNMKFTIGDARNGCHGSMMIEAFAAKDTLKVPFKSEGKGEFKTVSFKFRAIENRTRITFYSSFYHTRIHDYGSLCGPVIDQVIVYPVA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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