SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13400 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:7787822-7791149 REVERSE LENGTH=357 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0143 | KOG | Iron/ascorbate family oxidoreductases | JGI | ISS | |
| PTHR10209 | Panther | FE(II)/ ASCORBATE OXIDASE SUPERFAMILY | JGI | ISS | |
| PTHR10209:SF53 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | ISS | |
| UniRef100_F4JT13 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dioxygenase domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=F4JT13_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L5M0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L5M0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g36200 not represented in the dataset |
Glyma09g36200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g01130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g227900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36200.2 sequence type=transcript gene model=Glyma09g36200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACGATCCCTTGACCTCTTCTCTTCTTCGACGCAACCTGACTTGAGAACAAAAGCGAGTGTGAGTCTCATGGGCATGCAGACGCTGACCCTCTTTCGCTCCCCCCACCCTATTTCTCAAAACGCTGTCGTTCCCCGCCACGCCATGTCCCGCTCCTCCGAAACCTCCTTTCCCACCCTCACTACTATCTCCATCTCTTTCTCTCAACTCCAAGATAAGAACGCCGACTTGTCGTTCAAGATTGAAGAAGGCTTTGGACCCAATGGATTGGGGATTCTATCCGTCACTGATGTCCCAGGATACTCTTCATTGCGTAGAAATCTATTGCATCTTGCACCAAGATTGGCAAATCTTCCCAAAGAAGTGAAGGAGGATCTTGAAGATCCTCATAGTAGGTACAATTTTGGTTGGAGTCATGGGAAAGAGAAACTTGAATCTGGGAAGCCAGATATTTTAAAAGGATCTTTCTATGCCAATCCCATACTTGATACACCTACAACAGAGGCTTCTTTGATACAACGGTATCCATCATATTGCGGCTCAAATATATGGCCTAGAAACGCTTTACCAGAACTTGAAGTGGCTTTCAAAGCACTTGGGAAGCTGATATTTGACATTGGATTGATGTTGGCATATCACTGCGATCAATATGTATCCAAAGGGATGAAAATTCACAAGGATGAAGGTCTGGAATCAATACTTCGTTGCTCCCGCTGTCATAAAGGACGTTTGCTATATTATTTTCCTTCACAACAGGGAGTCCCAGATGGCAACTCTTTGTCTTCTTGGTGTGGATGGCATACTGACCACGGTTCACTGACAGGTCTGACTTGTGGTATGTTTACGAGAGATGGTGTAGAAATTGCTTGCCCTGATAGTGCTGCTGGCCTCTATATTCGAACAAGAAATAATCAAATTATCAAAGTTGTCTATGGAAAAGATGATATAGCATACCAAATTGGTGAAACCACTGAAATACTTTCTGGAGGTTATCTTTGTGCAACACCTCATTGTGTTCAGGCTCCTACGGGGGAGGAGTCCTCTGGTATTGAGCGCTCAACATTTGCATTATTCATGCAGCCTGACTGGGATGAAAAGCTCAATTTACCCGAGAAAGTTCACATTCATAAAGAGCTTATTCCATCAAATGCTGCCCTTACTTTTGGAGAGTATTCAGAGATGCTGCTCGACAAATATTACCACCAAAAACAGAACTAACTTGTTACTTCTCTGCCAACAAGCATAACTGGTTGAAGAGACTTAGCCTGTGAATTCATGAGACTAAAATAAAATTGTGTGAATGTGTAGTCGCTATTGGATAATCTCAAAAGAAAAGAATAACTGGGTAAGGTTACAAGGGTAACTGGTTGAAGAAACTTAGCCGGTTAATTCACGGGTAAATGTGTAGTCGCTATTGGGGTAATAGCAAAAGAAAAAGAAAATTCTTATAGATTACGTGGAATAGCAACATTTAATTTATTTAACAGGATATTAACTTATGGGATGGAATGAAAGTTACTGTACAATCCAATACTTATGTTCTTTTTCTTTTTATTGGGAAGTAATGCAATGATATAACCTACTTGTGATAGGATTTAAGCATCGA
>Glyma09g36200.1 sequence type=CDS gene model=Glyma09g36200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACGATCCCTTGACCTCTTCTCTTCTTCGACGCAACCTGACTTGAGAACAAAAGCGAGTGTGAGTCTCATGGGCATGCAGACGCTGACCCTCTTTCGCTCCCCCCACCCTATTTCTCAAAACGCTGTCGTTCCCCGCCACGCCATGTCCCGCTCCTCCGAAACCTCCTTTCCCACCCTCACTACTATCTCCATCTCTTTCTCTCAACTCCAAGATAAGAACGCCGACTTGTCGTTCAAGATTGAAGAAGGCTTTGGACCCAATGGATTGGGGATTCTATCCGTCACTGATGTCCCAGGATACTCTTCATTGCGTAGAAATCTATTGCATCTTGCACCAAGATTGGCAAATCTTCCCAAAGAAGTGAAGGAGGATCTTGAAGATCCTCATAGTAGGTACAATTTTGGTTGGAGTCATGGGAAAGAGAAACTTGAATCTGGGAAGCCAGATATTTTAAAAGGATCTTTCTATGCCAATCCCATACTTGATACACCTACAACAGAGGCTTCTTTGATACAACGGTATCCATCATATTGCGGCTCAAATATATGGCCTAGAAACGCTTTACCAGAACTTGAAGTGGCTTTCAAAGCACTTGGGAAGCTGATATTTGACATTGGATTGATGTTGGCATATCACTGCGATCAATATGTATCCAAAGGGATGAAAATTCACAAGGATGAAGGTCTGGAATCAATACTTCGTTGCTCCCGCTGTCATAAAGGACGTTTGCTATATTATTTTCCTTCACAACAGGGAGTCCCAGATGGCAACTCTTTGTCTTCTTGGTGTGGATGGCATACTGACCACGGTTCACTGACAGGTCTGACTTGTGGTATGTTTACGAGAGATGGTGTAGAAATTGCTTGCCCTGATAGTGCTGCTGGCCTCTATATTCGAACAAGAAATAATCAAATTATCAAAGTTGTCTATGGAAAAGATGATATAGCATACCAAATTGGTGAAACCACTGAAATACTTTCTGGAGGTTATCTTTGTGCAACACCTCATTGTGTTCAGGCTCCTACGGGGGAGGAGTCCTCTGGTATTGAGCGCTCAACATTTGCATTATTCATGCAGCCTGACTGGGATGAAAAGCTCAATTTACCCGAGAAAGTTCACATTCATAAAGAGCTTATTCCATCAAATGCTGCCCTTACTTTTGGAGAGTATTCAGAGATGCTGCTCGACAAATATTACCACCAAAAACAGTAA >Glyma09g36200.2 sequence type=CDS gene model=Glyma09g36200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACGATCCCTTGACCTCTTCTCTTCTTCGACGCAACCTGACTTGAGAACAAAAGCGAGTGTGAGTCTCATGGGCATGCAGACGCTGACCCTCTTTCGCTCCCCCCACCCTATTTCTCAAAACGCTGTCGTTCCCCGCCACGCCATGTCCCGCTCCTCCGAAACCTCCTTTCCCACCCTCACTACTATCTCCATCTCTTTCTCTCAACTCCAAGATAAGAACGCCGACTTGTCGTTCAAGATTGAAGAAGGCTTTGGACCCAATGGATTGGGGATTCTATCCGTCACTGATGTCCCAGGATACTCTTCATTGCGTAGAAATCTATTGCATCTTGCACCAAGATTGGCAAATCTTCCCAAAGAAGTGAAGGAGGATCTTGAAGATCCTCATAGTAGGTACAATTTTGGTTGGAGTCATGGGAAAGAGAAACTTGAATCTGGGAAGCCAGATATTTTAAAAGGATCTTTCTATGCCAATCCCATACTTGATACACCTACAACAGAGGCTTCTTTGATACAACGGTATCCATCATATTGCGGCTCAAATATATGGCCTAGAAACGCTTTACCAGAACTTGAAGTGGCTTTCAAAGCACTTGGGAAGCTGATATTTGACATTGGATTGATGTTGGCATATCACTGCGATCAATATGTATCCAAAGGGATGAAAATTCACAAGGATGAAGGTCTGGAATCAATACTTCGTTGCTCCCGCTGTCATAAAGGACGTTTGCTATATTATTTTCCTTCACAACAGGGAGTCCCAGATGGCAACTCTTTGTCTTCTTGGTGTGGATGGCATACTGACCACGGTTCACTGACAGGTCTGACTTGTGGTATGTTTACGAGAGATGGTGTAGAAATTGCTTGCCCTGATAGTGCTGCTGGCCTCTATATTCGAACAAGAAATAATCAAATTATCAAAGTTGTCTATGGAAAAGATGATATAGCATACCAAATTGGTGAAACCACTGAAATACTTTCTGGAGGTTATCTTTGTGCAACACCTCATTGTGTTCAGGCTCCTACGGGGGAGGAGTCCTCTGGTATTGAGCGCTCAACATTTGCATTATTCATGCAGCCTGACTGGGATGAAAAGCTCAATTTACCCGAGAAAGTTCACATTCATAAAGAGCTTATTCCATCAAATGCTGCCCTTACTTTTGGAGAGTATTCAGAGATGCTGCTCGACAAATATTACCACCAAAAACAGAACTAA
>Glyma09g36200.1 sequence type=predicted peptide gene model=Glyma09g36200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARSLDLFSSSTQPDLRTKASVSLMGMQTLTLFRSPHPISQNAVVPRHAMSRSSETSFPTLTTISISFSQLQDKNADLSFKIEEGFGPNGLGILSVTDVPGYSSLRRNLLHLAPRLANLPKEVKEDLEDPHSRYNFGWSHGKEKLESGKPDILKGSFYANPILDTPTTEASLIQRYPSYCGSNIWPRNALPELEVAFKALGKLIFDIGLMLAYHCDQYVSKGMKIHKDEGLESILRCSRCHKGRLLYYFPSQQGVPDGNSLSSWCGWHTDHGSLTGLTCGMFTRDGVEIACPDSAAGLYIRTRNNQIIKVVYGKDDIAYQIGETTEILSGGYLCATPHCVQAPTGEESSGIERSTFALFMQPDWDEKLNLPEKVHIHKELIPSNAALTFGEYSEMLLDKYYHQKQ* >Glyma09g36200.2 sequence type=predicted peptide gene model=Glyma09g36200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARSLDLFSSSTQPDLRTKASVSLMGMQTLTLFRSPHPISQNAVVPRHAMSRSSETSFPTLTTISISFSQLQDKNADLSFKIEEGFGPNGLGILSVTDVPGYSSLRRNLLHLAPRLANLPKEVKEDLEDPHSRYNFGWSHGKEKLESGKPDILKGSFYANPILDTPTTEASLIQRYPSYCGSNIWPRNALPELEVAFKALGKLIFDIGLMLAYHCDQYVSKGMKIHKDEGLESILRCSRCHKGRLLYYFPSQQGVPDGNSLSSWCGWHTDHGSLTGLTCGMFTRDGVEIACPDSAAGLYIRTRNNQIIKVVYGKDDIAYQIGETTEILSGGYLCATPHCVQAPTGEESSGIERSTFALFMQPDWDEKLNLPEKVHIHKELIPSNAALTFGEYSEMLLDKYYHQKQN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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