SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13700 | AT | Annotation by Michelle Graham. TAIR10: polyamine oxidase 1 | chr5:4420222-4422974 REVERSE LENGTH=472 | SoyBase | E_val: 0 | ISS |
| GO:0006598 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0046592 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polyamine oxidase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG0029 | KOG | Amine oxidase | JGI | ISS | |
| PTHR10742 | Panther | AMINE OXIDASE | JGI | ISS | |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | ISS | |
| UniRef100_B9RVL4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polyamine oxidase, putative n=1 Tax=Ricinus communis RepID=B9RVL4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L5L5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5L5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g36150 not represented in the dataset |
Glyma09g36150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g227500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36150.1 sequence type=CDS gene model=Glyma09g36150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCTCCCTCTCGCTCCTTCGTCATTATCGTCGGTGCTGGTGTATCCGGTATCTCTGCGGCAAAGCTGTTGGCCGAGAATGGCGTAAAGGATCTTGTAATCCTGGAGGCTTCAAACTGTATTGGCGGTAGGATTCGGAAGGAAAACTTCGGCGGTGTGTCCGTCGAACTCGGAGCTGGTTGGATTGTCGGAGTTGGCGGCAAAGAGTCCAATCCAATTTGGGAACTCGTCGCTGAATATGGCCTTCGAACATGCTTCTCTGACTACACGAATGTGCCATACAACATATATGATCGCAGTGGAAAGATATTTTCGAGTGGAATCGCTGCGGACTCGTACAAAAAAGCTGTGGACTCGGCAATTCGAAACTTAACGAACCAGGAAGAAGCCGATCGCGAAGGCAATAGCTCCAAAACAACTGAACCACCTTCGTCGCCATTAGAGCTAGCAATTGATTTCATCCTCCATGATTTTGAAATGGCAGAGGCAGTACCGATATCTACCTTTACAGCGTTTGGCGAAAGGGAATTTTTGGTTGCGGATGAAAGAGGTTTTGATTATTTGGTATATAAAATGGCTGAAGATTTTTTGTTGACATCTGAGGGTAAAATACTGGACACTCGTCTCAAACTCAACCATGTGGTCCGGGAAATAGAGCATCGGGGAAGTGGCGTTAGGGTGATAACAGAGGATGATTGCATTTATGAAGCAAATTACGTACTTGTGTCCGTTAGCATTGGGGTTCTCCAAAGCAACCTTGTTGCCTTCCATCCACCCTTACCCAGATGGAAATTAGAAGCCATAGAGAAATGTGATGTAACCGTGTACACCAAAATTTTCCTGAAGTTTCCATATCAGTTCTGGCCAAGTGGACCCGGAAATGAATTCTTCATATATGCTCACGATCAAAGAGGCTACTACACATTTTGGCAGCAAATGGAGAATGCATACCCTGGCTCTGATATCTTGGTGGTGACATTGACAAATGGTGAATCAAAACGTGTGGAAGCTCAATCGGATGAAGACACCTTGAGAGAAGCTATGGAGGTGCTCAAGGATATGTTTGGACCCAACATACCTGATGCCACTGATATACTTGTTCCCAGATGGTGGAATAACAGGTTCCAACGTGGCAGCTACAGCAACTATCCCGTTATCTCTAATCTCCAAGTAGTTCGTGATGTTAAGGCTCCAGTAGGTCGCATTTTCTTTACTGGAGAACACACGAGTGAAAGATTTAGTGGCTATGTGCATGGTGCATACCTCGCAGGTATCAATTCTAGCAAAGAACTACTTGAAGAAATGAGAAAGGACAACAAAAGAAAAAACAAGAGCCAAAGTCGAGTATTAGAGCCCTTGTCAGCATTAACCGAATGCAATATTCCTAGACAATAA
>Glyma09g36150.1 sequence type=predicted peptide gene model=Glyma09g36150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESPSRSFVIIVGAGVSGISAAKLLAENGVKDLVILEASNCIGGRIRKENFGGVSVELGAGWIVGVGGKESNPIWELVAEYGLRTCFSDYTNVPYNIYDRSGKIFSSGIAADSYKKAVDSAIRNLTNQEEADREGNSSKTTEPPSSPLELAIDFILHDFEMAEAVPISTFTAFGEREFLVADERGFDYLVYKMAEDFLLTSEGKILDTRLKLNHVVREIEHRGSGVRVITEDDCIYEANYVLVSVSIGVLQSNLVAFHPPLPRWKLEAIEKCDVTVYTKIFLKFPYQFWPSGPGNEFFIYAHDQRGYYTFWQQMENAYPGSDILVVTLTNGESKRVEAQSDEDTLREAMEVLKDMFGPNIPDATDILVPRWWNNRFQRGSYSNYPVISNLQVVRDVKAPVGRIFFTGEHTSERFSGYVHGAYLAGINSSKELLEEMRKDNKRKNKSQSRVLEPLSALTECNIPRQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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