SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60910 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:22501727-22503182 FORWARD LENGTH=252 | SoyBase | E_val: 6.00E-125 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| KOG1271 | KOG | Methyltransferases | JGI | ISS | |
| PTHR12176 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF08241 | PFAM | Methyltransferase domain | JGI | ISS | |
| UniRef100_B6U1V3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Methylase n=1 Tax=Zea mays RepID=B6U1V3_MAIZE | SoyBase | E_val: 6.00E-82 | ISS |
| UniRef100_I1L5K3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5K3_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma09g36070 not represented in the dataset |
Glyma09g36070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g01270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g226600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36070.3 sequence type=transcript gene model=Glyma09g36070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGAAGCCCAAGCAAAAGGGGGAGAAGTGAACTTCACACTTTCTGATGAGTGATGAGTTCTTATATTTATATACAAAAAAAAATCTGGTGTTGTGAGTCGCGGCCGTGTTCCAAGCAACAATCATCATAACCGATTAATCACTGTGATAAGATAAGATTGAAAAGATGTTTAGGGACGTGTCAAGCTGCAACACGTACAACTACGGCGAGGCTGTGTATTGGGACGCGCGCTACATCCAAGAGGATGGTTCCTGCGATTGGTACCAGCGTTATTCTGCTCTCAGGCCTTTTGTTCGCAATTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATTCTGTTATGTCAGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTGATATTTCTTCAATTGCAATTGACATGATGAGTAGAAAATATGAGCACATCCCACAGCTAAAATACTTGCAGATGAATGTCAGAGATATGAGCTTGTTTCCAGATGAATCTTTTGATGGTGTTATTGATAAAGGAACTCTTGATTCATTGATGTGTGGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCTGAAGTTTGTAGACTACTAAAACCTGGAGGGACCTATATTTTGATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCCCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCATACTTGGAGCCCATCGCTCTTACTGAAAAGGGCTTACTTTCAGCAGATTTCGTTCTGGAAGATCCAGATTCTCACTATATATATGTTTGTAAAAAGATAAATGACACAGAGATAGACAATAATACCTGCATACCAATTAACAGCTGATGTTTTATAGATCTGACTTACATTGAAGCACTGATGAAGGTAGTATTTATCCTCTTCACAAACTTTGATGTGCATCATAGTTATTTAAGTGGTTGCTTTTGTCATCTGTACCACTGGGACAAGTTACCACCGTCAATGTGTTGTTTGCAATAGCATTTTATTCTCATAAATTAGAGTAATGAAGTTAGCATGTAGAGATTATTGGTATTATTAGAATCTTAAAGAAATCAGACAAATTGACTGATTAATGTATTGTTTTGCCCGTGATTTTGTCTGGATGAATGGATTATGGTTGTAACATGTAAATGGCGTTTTCTTTGTCTAAAGCTTGAATTCTATTATAATACGTTTCTGTCCTAGCATTAGCTGTGGAA
>Glyma09g36070.1 sequence type=CDS gene model=Glyma09g36070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTAGGGACGTGTCAAGCTGCAACACGTACAACTACGGCGAGGCTGTGTATTGGGACGCGCGCTACATCCAAGAGGATGGTTCCTGCGATTGGTACCAGCGTTATTCTGCTCTCAGGCCTTTTGTTCGCAATTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATTCTGTTATGTCAGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTGATATTTCTTCAATTGCAATTGACATGATGAGTAGAAAATATGAGCACATCCCACAGCTAAAATACTTGCAGATGAATGTCAGAGATATGAGCTTGTTTCCAGATGAATCTTTTGATGGTGTTATTGATAAAGGAACTCTTGATTCATTGATGTGTGGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCTGAAGTTTGTAGGTTACTACTAAAACCTGGAGGGACCTATATTTTGATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCCCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCATACTTGGAGCCCATCGCTCTTACTGAAAAGGGCTTACTTTCAGCAGATTTCGTTCTGGAAGATCCAGATTCTCACTATATATATGTTTGTAAAAAGATAAATGACACAGAGATAGACAATAATACCTGCATACCAATTAACAGCTGA >Glyma09g36070.3 sequence type=CDS gene model=Glyma09g36070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTAGGGACGTGTCAAGCTGCAACACGTACAACTACGGCGAGGCTGTGTATTGGGACGCGCGCTACATCCAAGAGGATGGTTCCTGCGATTGGTACCAGCGTTATTCTGCTCTCAGGCCTTTTGTTCGCAATTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATTCTGTTATGTCAGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTGATATTTCTTCAATTGCAATTGACATGATGAGTAGAAAATATGAGCACATCCCACAGCTAAAATACTTGCAGATGAATGTCAGAGATATGAGCTTGTTTCCAGATGAATCTTTTGATGGTGTTATTGATAAAGGAACTCTTGATTCATTGATGTGTGGTACTGATGCTCCAATTAGTGCTGCTCAGATGCTTGCTGAAGTTTGTAGACTACTAAAACCTGGAGGGACCTATATTTTGATTACATATGGGGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCCCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCATACTTGGAGCCCATCGCTCTTACTGAAAAGGGCTTACTTTCAGCAGATTTCGTTCTGGAAGATCCAGATTCTCACTATATATATGTTTGTAAAAAGATAAATGACACAGAGATAGACAATAATACCTGCATACCAATTAACAGCTGA
>Glyma09g36070.1 sequence type=predicted peptide gene model=Glyma09g36070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFRDVSSCNTYNYGEAVYWDARYIQEDGSCDWYQRYSALRPFVRNFIPLSSRILMVGCGNSVMSEDMVKDGYEDIVNIDISSIAIDMMSRKYEHIPQLKYLQMNVRDMSLFPDESFDGVIDKGTLDSLMCGTDAPISAAQMLAEVCRLLLKPGGTYILITYGDPTVRMPHISRPVFNWKITLYNIPRPGFQKPESSTPSRKSYLEPIALTEKGLLSADFVLEDPDSHYIYVCKKINDTEIDNNTCIPINS* >Glyma09g36070.3 sequence type=predicted peptide gene model=Glyma09g36070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFRDVSSCNTYNYGEAVYWDARYIQEDGSCDWYQRYSALRPFVRNFIPLSSRILMVGCGNSVMSEDMVKDGYEDIVNIDISSIAIDMMSRKYEHIPQLKYLQMNVRDMSLFPDESFDGVIDKGTLDSLMCGTDAPISAAQMLAEVCRLLKPGGTYILITYGDPTVRMPHISRPVFNWKITLYNIPRPGFQKPESSTPSRKSYLEPIALTEKGLLSADFVLEDPDSHYIYVCKKINDTEIDNNTCIPINS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
