SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51970 | AT | Annotation by Michelle Graham. TAIR10: acyl-CoA sterol acyl transferase 1 | chr3:19284420-19285457 FORWARD LENGTH=345 | SoyBase | E_val: 5.00E-110 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0016127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol catabolic process | SoyBase | N/A | ISS |
| GO:0034434 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol esterification | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| UniRef100_B9T2F2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acyltransferase, putative n=1 Tax=Ricinus communis RepID=B9T2F2_RICCO | SoyBase | E_val: 2.00E-124 | ISS |
| UniRef100_UPI0002338192 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338192 related cluster n=1 Tax=unknown RepID=UPI0002338192 | SoyBase | E_val: 0 | ISS |
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Glyma09g36030 not represented in the dataset |
Glyma09g36030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g226200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g36030.3 sequence type=transcript gene model=Glyma09g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCTCAAACAATTGTTTCAGCCTTAAGATATTAACTTCAAAATTAGCCCATCCTTCTCATTTCACGGGGCATATAATTAGATAATTACCTAAAGCTTCATCAAAAGATCTTAGCTCATATACTTTGGTTTGGACGGATTGCATCATTAATTTTAAAGTTTTGATTTGGTCGAATTCACAATGAGAGATGTGTAGATATTGTATCCTTTCCAGGTAATAATGTTCCAGAGGCACCCCTTGGAGATTCTCCAGGCCTGAGAAGTTGAGAATTGGTGTACAGTAGAGCCCTCCCAGGGTTTGCGAGTTAGGATAAGAGAATTTGATTGATTAGTACTTGAGCATTGCATTGCTCTTACGACAATTGAATATTGAGCAGTTATGGAAGGTGACATGATGAATCTGATCAAGGTGTGCCCCTCAGTTGTCATATCTTTATGCTACTGTTATTGGATCCGCAAATTGGTCCCTCCAGGAATAAAAAGACTTGTGTTTCTTCTTCCCATCATATGCTTGTACATTTTCATTCCTCTCAGCTTTTCTTCTGTACACTTGACTGGCACCATAGGTTTCTTCCTCGCCTGGCTAGCAAACTTCAAACTCTTACTCTTTGCTTTCGATATGGGACCTTTGTCCTCTCACCCATTAATCTCTCTTCCACGTTTTGTTGCTGTTGCGTGCTTCCCTATCAAGATCCAACAAAATCAACCTCGTCAAAATGGTAAAACCCCACATCCAAATCCATCTTCAATGATACGGTATGCCATAGAGGGTCTTGCTTTGGGCGTTTTGCTGAAAATCTATGACTACAGTGATCGTATTCATCCGAAAGCGATAATGTGTATGTACTGTTTCCACATCTACTTTTTGTTGGAAATAATCTTAGCCATGGTTGCAGCCATGGCTCGAAGCATGATGGGGTTGGAGCTGGAGCCACAGTTCAATGATCCACTGAGCTCAACCTCACTGCAAGACTTCTGGGGGAGAAGATGGAACCTCATGGTCACCAGCATCCTGCGACCAACGGTGTACGATCCCACATTGAAAGCTGCAGTGAATGTCGTGGGTCCCAAGTGGGCCCCACTACCAGCGGTGTTTGGAACCTTTGTGGTTTCTGGTTTGATGCATGAGTTGATACTGTTCTACATGGGGAGGTTGCAGCCCACCTTCTGGATGACGTGGTTCTTTGTCCTACATGGGATCTTCCTGACGGTGGAGATTGCGTTCAAGAGGGCCCTCACAGCCAGGTGCCGGTTGCCGAGGTTTGTGTCGGGGCCATTGACCGTCGGATTTGTCTTAGCCACCGGCATTAGCCTGTTCCTGCCGGAGTTCATACGGTGTCAGATTGATGTTAAGGCGTTTCAGGAATACGCTGAGTTAGGGCAGCTTCTAAACAATCTCACTTGCGGCATCTTTCATAATAGTAATCTTTAGGTGTGGGGATAATATGCATGTTTCGAGCATATTTTTATAAGTCGTCTTTTATCACTACTATGCGATTCATTTCTTATTTAATAAACAAGCATTACCTATTAAA
>Glyma09g36030.2 sequence type=CDS gene model=Glyma09g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGTGACATGATGAATCTGATCAAGGTGTGCCCCTCAGTTGTCATATCTTTATGCTACTGTTATTGGATCCGCAAATTGGTCCCTCCAGGAATAAAAAGACTTGTGTTTCTTCTTCCCATCATATGCTTGTACATTTTCATTCCTCTCAGCTTTTCTTCTGTACACTTGACTGGCACCATAGGTTTCTTCCTCGCCTGGCTAGCAAACTTCAAACTCTTACTCTTTGCTTTCGATATGGGACCTTTGTCCTCTCACCCATTAATCTCTCTTCCACGTTTTGTTGCTGTTGCGTGCTTCCCTATCAAGATCCAACAAAATCAACCTCGTCAAAATGGTAAAACCCCACATCCAAATCCATCTTCAATGATACGGTATGCCATAGAGGGTCTTGCTTTGGGCGTTTTGCTGAAAATCTATGACTACAGTGATCGTATTCATCCGAAAGCGATAATGTGTATGTACTGTTTCCACATCTACTTTTTGTTGGAAATAATCTTAGCCATGGTTGCAGCCATGGCTCGAAGCATGATGGGGTTGGAGCTGGAGCCACAGTTCAATGATCCACTGAGCTCAACCTCACTGCAAGACTTCTGGGGGAGAAGATGGAACCTCATGGTCACCAGCATCCTGCGACCAACGGTGTACGATCCCACATTGAAAGCTGCAGTGAATGTCGTGGGTCCCAAGTGGGCCCCACTACCAGCGGTGTTTGGAACCTTTGTGGTTTCTGGTTTGATGCATGAGTTGATACTGTTCTACATGGGGAGGTTGCAGCCCACCTTCTGGATGACGTGGTTCTTTGTCCTACATGGGATCTTCCTGACGGTGGAGATTGCGTTCAAGAGGGCCCTCACAGCCAGGTGCCGGTTGCCGAGGTTTGTGTCGGGGCCATTGACCGTCGGATTTGTCTTAGCCACCGGCATTAGCCTGTTCCTGCCGGAGTTCATACGGTGTCAGATTGATGTTAAGGCGTTTCAGGAATACGCTGAGTTAGGGCAGCTTCTAAACAATCTCACTTGCGGCATCTTTCATAATAGTAATCTTTAG >Glyma09g36030.3 sequence type=CDS gene model=Glyma09g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGTGACATGATGAATCTGATCAAGGTGTGCCCCTCAGTTGTCATATCTTTATGCTACTGTTATTGGATCCGCAAATTGGTCCCTCCAGGAATAAAAAGACTTGTGTTTCTTCTTCCCATCATATGCTTGTACATTTTCATTCCTCTCAGCTTTTCTTCTGTACACTTGACTGGCACCATAGGTTTCTTCCTCGCCTGGCTAGCAAACTTCAAACTCTTACTCTTTGCTTTCGATATGGGACCTTTGTCCTCTCACCCATTAATCTCTCTTCCACGTTTTGTTGCTGTTGCGTGCTTCCCTATCAAGATCCAACAAAATCAACCTCGTCAAAATGGTAAAACCCCACATCCAAATCCATCTTCAATGATACGGTATGCCATAGAGGGTCTTGCTTTGGGCGTTTTGCTGAAAATCTATGACTACAGTGATCGTATTCATCCGAAAGCGATAATGTGTATGTACTGTTTCCACATCTACTTTTTGTTGGAAATAATCTTAGCCATGGTTGCAGCCATGGCTCGAAGCATGATGGGGTTGGAGCTGGAGCCACAGTTCAATGATCCACTGAGCTCAACCTCACTGCAAGACTTCTGGGGGAGAAGATGGAACCTCATGGTCACCAGCATCCTGCGACCAACGGTGTACGATCCCACATTGAAAGCTGCAGTGAATGTCGTGGGTCCCAAGTGGGCCCCACTACCAGCGGTGTTTGGAACCTTTGTGGTTTCTGGTTTGATGCATGAGTTGATACTGTTCTACATGGGGAGGTTGCAGCCCACCTTCTGGATGACGTGGTTCTTTGTCCTACATGGGATCTTCCTGACGGTGGAGATTGCGTTCAAGAGGGCCCTCACAGCCAGGTGCCGGTTGCCGAGGTTTGTGTCGGGGCCATTGACCGTCGGATTTGTCTTAGCCACCGGCATTAGCCTGTTCCTGCCGGAGTTCATACGGTGTCAGATTGATGTTAAGGCGTTTCAGGAATACGCTGAGTTAGGGCAGCTTCTAAACAATCTCACTTGCGGCATCTTTCATAATAGTAATCTTTAG
>Glyma09g36030.2 sequence type=predicted peptide gene model=Glyma09g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGDMMNLIKVCPSVVISLCYCYWIRKLVPPGIKRLVFLLPIICLYIFIPLSFSSVHLTGTIGFFLAWLANFKLLLFAFDMGPLSSHPLISLPRFVAVACFPIKIQQNQPRQNGKTPHPNPSSMIRYAIEGLALGVLLKIYDYSDRIHPKAIMCMYCFHIYFLLEIILAMVAAMARSMMGLELEPQFNDPLSSTSLQDFWGRRWNLMVTSILRPTVYDPTLKAAVNVVGPKWAPLPAVFGTFVVSGLMHELILFYMGRLQPTFWMTWFFVLHGIFLTVEIAFKRALTARCRLPRFVSGPLTVGFVLATGISLFLPEFIRCQIDVKAFQEYAELGQLLNNLTCGIFHNSNL* >Glyma09g36030.3 sequence type=predicted peptide gene model=Glyma09g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGDMMNLIKVCPSVVISLCYCYWIRKLVPPGIKRLVFLLPIICLYIFIPLSFSSVHLTGTIGFFLAWLANFKLLLFAFDMGPLSSHPLISLPRFVAVACFPIKIQQNQPRQNGKTPHPNPSSMIRYAIEGLALGVLLKIYDYSDRIHPKAIMCMYCFHIYFLLEIILAMVAAMARSMMGLELEPQFNDPLSSTSLQDFWGRRWNLMVTSILRPTVYDPTLKAAVNVVGPKWAPLPAVFGTFVVSGLMHELILFYMGRLQPTFWMTWFFVLHGIFLTVEIAFKRALTARCRLPRFVSGPLTVGFVLATGISLFLPEFIRCQIDVKAFQEYAELGQLLNNLTCGIFHNSNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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