SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57330 | AT | Annotation by Michelle Graham. TAIR10: autoinhibited Ca2+-ATPase 11 | chr3:21211655-21216375 REVERSE LENGTH=1025 | SoyBase | E_val: 0 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006754 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process | SoyBase | N/A | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0055081 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion homeostasis | SoyBase | N/A | ISS |
| GO:0070588 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005388 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium-transporting ATPase activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0015662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0204 | KOG | Calcium transporting ATPase | JGI | ISS | |
| PTHR24093 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24093:SF73 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00122 | PFAM | E1-E2 ATPase | JGI | ISS | |
| PF00689 | PFAM | Cation transporting ATPase, C-terminus | JGI | ISS | |
| PF00690 | PFAM | Cation transporter/ATPase, N-terminus | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| PF12515 | PFAM | Ca2+-ATPase N terminal autoinhibitory domain | JGI | ISS | |
| UniRef100_G7JUR7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-transporting ATPase 4, plasma membrane-type n=1 Tax=Medicago truncatula RepID=G7JUR7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233818E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233818E related cluster n=1 Tax=unknown RepID=UPI000233818E | SoyBase | E_val: 0 | ISS |
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Glyma09g35970 not represented in the dataset |
Glyma09g35970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g01360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g225500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g35970.1 sequence type=CDS gene model=Glyma09g35970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGTACCTTAGAGAAAACTTTAGCGTTCAGCCGAAGAACCCTTCCGAGGCGGCCCTCCTCCGATGGAGATCCGCCGTCTCCGTCGTCAAGAATCCCCGCCGCCGCTTCCGCATGGTGGCCAATCTCGCCCAACGCGCCGACGCCGAACAAAAGCGCACGAAGCTCCAGGAAAAGATACGGGTTGCTCTCTATGTGCAAAAAGCAGCGTTGCATTTTATTAACGCTGGGAACCGTGGTGGTGGTTCCATGCTCTCCAAAGAGATTCAGGAAGCAGGCTTTGGAATTGAGCCCGACGAATTAGCCTCCATTGTTCGATCCCATGACACCAAATGTTTAGAACATCATAAAGGAGTTGAAGGAGTAGCAAGAGCTGTTCGTGTGTCATTGCAAGAGGGCGTTAACACACTCGATGTTCACCACAGACAAAATATCTATGGTTTTAACCGCCATGCCGAGAAGCCCCCAAAAAGCTTTTGGATGTTCGTTTGGGATGCAATGCAGGACTTAACTCTAATCATCCTTATGGTATGTTCTTTTGTTTCAGTAGGTGTTGGAATCCTAACAGAAGGTTGGCCAAAAGGTATGTACGATGGAGTTGGAATCATACTATGCATCCTTTTAGTGGTCTTTGTCACTTCAATCAGTGACTATAAACAGTCTTTGCAATTTAAGGATTTGGACAAAGAAAAGAAAAATGTGAGCATTCAAGTTACAAGAGATAGCAAAAGACAAAAAGTTTCAATTCATGATCTAGTAGTAGGAGACATAGTCCATCTGTCAATAGGAGACATAGTTCCTGGAGATGGATTATTCACGTCAGGTTTCGGTTTATTAATAGATGAATCAAGCCTATCAGGTGAGAGTGAGGCTGTGAATGTTGATCAAGAGAAGCCTTTTCTTCTATCAGGGACGACAGTGCAAGATGGTTCTGCTAAGATGCTGGTGACATCCGTTGGTGTGAGGACTGAATGGGGAAGATTGATGGATACTCTGAACGAAGGGGGAGATGATGAGACACCACTTCAGGTCAAACTAAATGGGGTTGCTACCATTATTGGAAAGATAGGTTTGTGTTTTGCAGTAGTCACATTCATGGTTCTCACGGGCAGGTTTTTGTGCGAGAAAATAGCTCACCATGAGATCACAAAATGGTCGCTAAATGATGCATCTAGCCTTCTCAATTTCTTTGCCACTGCTGTCATCATAATAGTTGTGGCAGTTCCTGAGGGGCTTCCTTTGGCAGTCACACTAAGCCTTGCATTTGCAATGAAGAAATTGATGAATGACAAGGCACTAGTAAGGCACCTCTCCGCATGCGAGACAATGGGTTCTGCTGGTTGTATTTGCACTGATAAAACCGGGACTTTGACTACAAACCACATGGTTGTGGACAAAATATGGATTTGCCAACAAACTAAGGCCATTAATATCGGCAACAGTGAAAATGTGTTCAAGTCCTCAGTTTCCGAACACATATTTGATCTCCTCTTGCAATCCATATTCCAGAACACTGGCTCAGAGATAGTCAAAGGGCAAGATGGAAGGAACAAGATCATGGGTACTCCCACAGAGTCCGCGTTGCTGGAGTTTGGCTTGCTTTTAGGAGGTGATTCCAAGTTTTATAACGACAAGTATAAAATAGTGAAGGTTGAGCCTTTCAATTCAATCAGAAAAAAGATGTCAGTGCTGGTGGCTCTTCCCGATGGCACCAACACCAAGTATCGAGCATTCTGCAAAGGAGCCTCAGAAATAGTTCTGAAAATGTGTCAAAAAGTTGTGAATGCAGACGGCAAAGTCGTCCAATTGAACGAACAACAAAGGAATAGCGTCACAGAAGTTATCAGTGGTTTTGCTTCTCAGGCTCTGAGAACACTCTGCATTGCCTTCAAGGATATTGAAGGATCTTCTGGAAGTGATAGTAATAGTATTCCTGAGGATAAGTACACGTTGATAGCTATTGTTGGGATCAAGGATCCAGTGAGGCCTGGAGTAAAAGAAGCTGTTAAGACTTGCTTAGAAGCTGGCATTGTCGTTAGAATGGTGACTGGTGACAACATAAATACCGCTAAAGCAATAGCCAGAGAATGCGGCATATTGACAGATGGAATAGCAATAGAGGGACAAGATTTCAGGAACAAGAGCCCGCAAGAATTGATGAACATAATACCAAAAATACAGGTAATGGCCCGATCCTTGCCTCTTGACAAGCACACCTTAGTGAAACATTTGAGGAATGATTTTAATGAGGTTGTGGCAGTAACTGGTGATGGGACCAATGATGCTCCAGCTTTGCATGAGGCTGATATTGGACTTGCTATGGGTATTGCAGGGACAGAGGTTGCCAAAGAGAACGCGGATGTGATTGTAATGGATGATAACTTCACAACCATAGTGAATGTTACCAGATGGGGCCGTGCTGTTTATATTAATATACAAAAGTTTGTCCAGTTCCAGTTAACAGTTAATGTTGTTGCTCTCATGCTGAATTTTGTTTCAGCATGCGTGTCAGGCTCAGCTCCTCTTACTGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACCCTGGGAGCATTGGCACTGGCTACAGAACCTCCTCATGATGGGCTGATGAAGATGCCACCTATTGGAAGGAACGCCAAATTCATCACCAGGGTCATGTGGAGGAACATAATAGGTCAGGGCATATACCAAATTATTGTCCTTTTGGTTCTCAAGTTTCGTGGGAAACAGATTCTCAACCTTAATGGACCGGATGATGCTACCTTACTTCTCAATACCGTCATATTCAACACCTTTGTATTTTGCCAGGTATTCAACGAGATAAACAGCCGTGACATGGAGAAGGTTAATGTTTTACAAGGCATGTTGAGCAGCTGGGTTTTTCTGATGGTGATGGCCGCAACTATATGCTTTCAAGCCATAATTGTTGAATATTTGGGTGCTTTTGCTCAAACAGTGCCACTGAGCAGGGAGTTGTGGTTAACAAGCGTGATGATTGGTGCGGTAAGTATAGTTGTAGGTGCTATCCTAAAGTGCATTCCAGTTCCATCCAGTAACTACGTTGCCACGCACCATGATGGCTACGAGCAACTTCCCAGTGGACCAGAGCTCGCATGA
>Glyma09g35970.1 sequence type=predicted peptide gene model=Glyma09g35970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKYLRENFSVQPKNPSEAALLRWRSAVSVVKNPRRRFRMVANLAQRADAEQKRTKLQEKIRVALYVQKAALHFINAGNRGGGSMLSKEIQEAGFGIEPDELASIVRSHDTKCLEHHKGVEGVARAVRVSLQEGVNTLDVHHRQNIYGFNRHAEKPPKSFWMFVWDAMQDLTLIILMVCSFVSVGVGILTEGWPKGMYDGVGIILCILLVVFVTSISDYKQSLQFKDLDKEKKNVSIQVTRDSKRQKVSIHDLVVGDIVHLSIGDIVPGDGLFTSGFGLLIDESSLSGESEAVNVDQEKPFLLSGTTVQDGSAKMLVTSVGVRTEWGRLMDTLNEGGDDETPLQVKLNGVATIIGKIGLCFAVVTFMVLTGRFLCEKIAHHEITKWSLNDASSLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKIWICQQTKAINIGNSENVFKSSVSEHIFDLLLQSIFQNTGSEIVKGQDGRNKIMGTPTESALLEFGLLLGGDSKFYNDKYKIVKVEPFNSIRKKMSVLVALPDGTNTKYRAFCKGASEIVLKMCQKVVNADGKVVQLNEQQRNSVTEVISGFASQALRTLCIAFKDIEGSSGSDSNSIPEDKYTLIAIVGIKDPVRPGVKEAVKTCLEAGIVVRMVTGDNINTAKAIARECGILTDGIAIEGQDFRNKSPQELMNIIPKIQVMARSLPLDKHTLVKHLRNDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFTTIVNVTRWGRAVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKMPPIGRNAKFITRVMWRNIIGQGIYQIIVLLVLKFRGKQILNLNGPDDATLLLNTVIFNTFVFCQVFNEINSRDMEKVNVLQGMLSSWVFLMVMAATICFQAIIVEYLGAFAQTVPLSRELWLTSVMIGAVSIVVGAILKCIPVPSSNYVATHHDGYEQLPSGPELA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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