SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G47450 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:17483195-17486249 REVERSE LENGTH=561 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0006809 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitric oxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0006897 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endocytosis | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009657 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid organization | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ozone | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0051246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1249 | KOG | Predicted GTPases | JGI | ISS | |
| PTHR11089 | Panther | GTP-BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR11089:SF36 | Panther | JGI | ISS | ||
| UniRef100_G7IGS4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nitric oxide synthase n=1 Tax=Medicago truncatula RepID=G7IGS4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L5I2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5I2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g35850 not represented in the dataset |
Glyma09g35850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g01500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g224600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g35850.1 sequence type=CDS gene model=Glyma09g35850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCTTAAAACCCTATCCACTTTCTTCTCACCTCTTTCTCTTCCCAACACCAAATTCCTCACCTCCAAGCCTTGCCTCATTCTCTTCGAATTCCCGCGCTCTCAGAAATCGCGCTTGCCCGTCGCCGATGCTGAAGGCACCGGCGCTGCCGCTCCTTCGCCCGGCGAGAAGTTCCTCGAACGCCAACAGTCCTTCGAAGATGCTAAGCTCATTCTCAAAGAGAACAACAAGAATAAGAAGAAAAAGAAGAAAGATAATGCTATAAAAGCTTCTAGAGCCGTCGCTTCTTGCTACGGCTGCGGCGCTCCGTTACACACTTCCGATGCCGATGCCCCTGGCTACGTCGATCCCGAAACCTATGAATTGAAGAAGAAACACCACCAGCTTCGAACCGTTCTGTGTAGGCGGTGCCGGCTTTTGTCTCATGGCAAGATGATAACTGCCGTTGGAGGACACGGTGGATACCCTGGCGGTAAATTATTCGTTTCTGCTGAAGAGCTTCGAGAAAAATTGTCTCACCTGCGTCACGAGAAAGCTCTAATTGTTAAATTGGTTGACATTGTTGACTTCAATGGCAGTTTTTTGTCTCGTGTGCGAGATCTTGCTGGTTCTAATCCAATAGTATTGGTGGTGACTAAGGTTGATCTCCTTCCAAGAGATACTGATCTTAACTGTGTTGGGGATTGGGTTGTAGAGGCTACTATGAGAAAGAAGCTAAATGTTCTCAGTGTCCATCTGACCAGTTCCAAATCATTGGTTGGAATAACTGGGGTGATATCAGAAATCCAGAAAGAGAAGAAGGGAAGAGATGTTTACATTCTGGGTTCAGCTAATGTTGGGAAATCTGCTTTCATCAATGCTTTACTAAAAACAATGGCTATAAATGATCCAGTGGCTGCATCTGCACAAAGATACAAACCAATACAATCTGCAGTTCCCGGAACTACCTTAGGGCCAATTCAAATTAATGCTTTCCTAGGAGGAGGGAAATTGTATGACACTCCTGGAGTTCATCTCTTCCATAGGCAAACTGCAGTTGTTCATTCTGAAGATCTACCCATCCTTGCTCCTCAAAGCCGACTGAGGGGCCTGGCTTTCCCAAGTTCTATAGTATCTTCAGACAATGTAGAGGAAGGAGCTTCCACTATAGTGAATGGCTTGAATGAATTTTCAATATTTTGGGGAGGTCTTGTTAGAATTGATGTCTTGAAGGTTCTCCCAGAAACTTGTTTGACATTTTATGGACCCAAGAGAATACCAATTCATATGGTACCCACTGAGCAAGCAGTTGAATTTTATCAGACAGAACTTGGATTTCTGCTGACCCCACCAAGTGGGGGAGAAAATGCTGAGAACTGGAAAGGACTTGAATCAGAACGTAAATTGCAAATAAAATTCGAAGTTGTGGACAGACCAGCTTGTGATATAGCTATATCAGGTCTAGGATGGTTTACTGTTGAGCCAGTTAGCAGGTCACACAAAATCTCGCAACCAAAACCTGTAGAGACTGCTGGGGAATTGATATTGGCTGTGCATGTCCCCAAGGCTGTTGAGATTTTTGTGAGGCCACCAATACCAGTAAGCAAGGCTGGAGCAGAGTGGTACCAGTATGTAGAATTAACAGAGAAACAAGAGGAAATGAGACCAAAATGGTACTTTTAA
>Glyma09g35850.1 sequence type=predicted peptide gene model=Glyma09g35850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALKTLSTFFSPLSLPNTKFLTSKPCLILFEFPRSQKSRLPVADAEGTGAAAPSPGEKFLERQQSFEDAKLILKENNKNKKKKKKDNAIKASRAVASCYGCGAPLHTSDADAPGYVDPETYELKKKHHQLRTVLCRRCRLLSHGKMITAVGGHGGYPGGKLFVSAEELREKLSHLRHEKALIVKLVDIVDFNGSFLSRVRDLAGSNPIVLVVTKVDLLPRDTDLNCVGDWVVEATMRKKLNVLSVHLTSSKSLVGITGVISEIQKEKKGRDVYILGSANVGKSAFINALLKTMAINDPVAASAQRYKPIQSAVPGTTLGPIQINAFLGGGKLYDTPGVHLFHRQTAVVHSEDLPILAPQSRLRGLAFPSSIVSSDNVEEGASTIVNGLNEFSIFWGGLVRIDVLKVLPETCLTFYGPKRIPIHMVPTEQAVEFYQTELGFLLTPPSGGENAENWKGLESERKLQIKFEVVDRPACDIAISGLGWFTVEPVSRSHKISQPKPVETAGELILAVHVPKAVEIFVRPPIPVSKAGAEWYQYVELTEKQEEMRPKWYF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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