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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51430 | AT | Annotation by Michelle Graham. TAIR10: conserved oligomeric Golgi complex component-related / COG complex component-related | chr5:20887044-20890795 REVERSE LENGTH=836 | SoyBase | E_val: 0 | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010016 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot morphogenesis | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0045053 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein retention in Golgi apparatus | SoyBase | N/A | ISS |
| GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4182 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR21443 | Panther | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7 | JGI | ISS | |
| PF10191 | PFAM | Golgi complex component 7 (COG7) | JGI | ISS | |
| UniRef100_G7KHJ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Conserved oligomeric Golgi complex subunit n=1 Tax=Medicago truncatula RepID=G7KHJ7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L5H6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5H6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g35790 not represented in the dataset |
Glyma09g35790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g01570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g224000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g35790.1 sequence type=CDS gene model=Glyma09g35790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCTGGATTTGGGTTCGTTCTCGAATGAGAACTTTGACCCGAAGAAATGGATCAACTCAGCGTGTCAGAGTCGGCACCCTCAGGACTCTTTGGACAAACACCTGGTGGACATGGAGATGAAGCTCCAGATGGTCTCCGAGGAAATCGCCGCCTCGCTCGAGGAGCAGAGCTCCGCCGCTCTCCTCCGCGTCCCCCGCGCCACTCGCGACGTCATCCGCCTCCGCGACGACGCCGTTTCTCTCCGCTCCGCTGTCTCCTCCATCCTCCAGAAGCTCAAGAAGGCAGAGGGATCATCGGCTGAATCTATAGCTGCACTTGCTAAAGTCGATGTTGTCAAACAGAGGATGGAAGCTGCATATGAAACGTTGCAGGATGCTGCGGGATTAACTCAACTGAGTGCGACTGTGGAGGATGTATTTGCCAGTGGAGATCTTCCTCGTGCTGCAGAAACGTTAGCTAACATGAGGCATTGCTTGTCTGCAGTCGGGGAGGTTGCTGAATTTGCCAACATAAGAAAGCAACTTGAAGTCTTGGAGGACAGGCTAGACAATATGGTGCAGCCTCGTCTTACAGATGCATTATCTAATCGTAAGGTTGATGCTGCTCAAGATTTACGTGGAATTCTCATTAGAATTGGAAGGTTTAAGTCTCTGGAATCACAATATATAAAGGTTCACCTGAAACCCATAAAGCAGCTTTGGGAAGATTTTGATTCAAGAGAACGAGCTAGTAAGTCTGCAAATGAGAAGAATGAGATGGAGAGGACATCAAGTGGTGATGATTTTCAGTCGGTTTCACCTGCAATTCCATTCTCCAGTTGGCTACCAAGCTTTTATGATGAGCTACTACTTTATCTTGAACAAGAATGGAAATGGTGTATGATTGCTTTCCCTGATGACTATAAAACTCTTGTCCCAAGGCTACTAAGTGAGACTATGATGGCTATAGGTTCCAGTTTCATATCTCGTATCAACCTTGCCATTGGAGATGCTGTTCCAGAAACAAAAGCACTGGCTAAAGGTTTGTTAGATATTTTAGCTGGAGATATGCAAAAGGGTATTAAGCTTCAGACAAAGCATCTGGAGGCCTTGATTGAATTGCACAATATGACTGGGACCTTTGCAAGGAATATTCAGCACTTATTTTCTGTTTCTGATGTCCGGGTTTTAATGGATGTGCTTAAATCTGTGTACTTGCCTTATGAATCGTTTAAACAGAGATATGGACAAATGGAGCGTGCCATCCTTTCCGCTGAGATTGCAGGAGTAGATTTAAGAGGAGCTGTTATACGAGGGTTGGGAGCCCAAGGTGTTGAACTCAGTGAAACAGTTCGCAGGATGGAGGAGTCTATTCCCCAAATAACTATACTTCTTGAAGCAGCTGCAGAGAGATGCATCAACTTCACTGGAGGTTCTGAGGCAGACGAGTTAATTCTTGCTCTTGATGACATAATGTTACAGTACATTTCCACTCTGCAAGAAACTCTCAAGTCACTGAGAACTGTCTGTGGTGTGGATTATGGAAGTGATGGTACTGTTAAGAAGGACATGGAGAAGAAGGATGGAAACCAAAATGCTCGGAGAGTTGATTTGATCTCTAATGAGGAGGAATGGTCGATAGTCCAAGGGGCATTGCAGATCTTGACAGTTGCAGATAATTTGACAAGCAGGTCTTCTGTATTTGAAGCATCTTTAAGAGCTACTCTTGCTAGATTGAGCACAACTCTATCTTTTTCTGCATTTGGATCAAGTTTAGACCAACACCAGACTATAAACAGTAGTGTAGATGGGGAACCATCTTATGGTGGAAGGGCTGCCTTGGATATGGCAGCACTGCGGTTGGTTGATGTGTCTGAGAAGGCAAGGAAACTCTTTAACCTTTTGAATCAGTCTAGAGATCCTCGATTTCATGCACTTCCTCTTGCATCTCAAAGAGTTGCAGCATTTACAGATACAGTTAATGAACTTGTATATGATGTCCTCATATCTAAAGTACGGCAACGCCTCAGTGACGTGTCCCGTTTGCCAATTTGGTCATCAGTCGAGGAACAAGGAGCCTTTCCTCTCCCTACCTTCAGTGCATATCCACAGTCATATGTCACCAGTGTTGGTGAATATCTTCTTACTTTACCCCAACAATTGGAGCCACTTGCTGAGGGAATCTCTAACAATGAAGTCAATGATGAAGCACAGTTCTTTGCAACTGAATGGATGTTCAAGGTTGCAGAGGGTGCAACTGCACTTTACATAGAGCAGTTGCGTGGGATTCAGTACATTTCAGATCGTGGAGCACAGCAGCTATCAGTTGATATTGAGTATCTTAGTAATGTGCTCTCTGCTCTTTCAATGCCAATCCCTCCAGTTCTGGCTACATTCCAAAGTTGTCTTTCTACTCCAAGAAACCAGCTAAAAGATCTTTTAAAGACAGATTCAGGAAACCAACTTGATTTGCCAACAGCAAACCTTGTCTGTAAGATGCGACGAGTGAATTTGGATTCATGA
>Glyma09g35790.1 sequence type=predicted peptide gene model=Glyma09g35790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMLDLGSFSNENFDPKKWINSACQSRHPQDSLDKHLVDMEMKLQMVSEEIAASLEEQSSAALLRVPRATRDVIRLRDDAVSLRSAVSSILQKLKKAEGSSAESIAALAKVDVVKQRMEAAYETLQDAAGLTQLSATVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDNMVQPRLTDALSNRKVDAAQDLRGILIRIGRFKSLESQYIKVHLKPIKQLWEDFDSRERASKSANEKNEMERTSSGDDFQSVSPAIPFSSWLPSFYDELLLYLEQEWKWCMIAFPDDYKTLVPRLLSETMMAIGSSFISRINLAIGDAVPETKALAKGLLDILAGDMQKGIKLQTKHLEALIELHNMTGTFARNIQHLFSVSDVRVLMDVLKSVYLPYESFKQRYGQMERAILSAEIAGVDLRGAVIRGLGAQGVELSETVRRMEESIPQITILLEAAAERCINFTGGSEADELILALDDIMLQYISTLQETLKSLRTVCGVDYGSDGTVKKDMEKKDGNQNARRVDLISNEEEWSIVQGALQILTVADNLTSRSSVFEASLRATLARLSTTLSFSAFGSSLDQHQTINSSVDGEPSYGGRAALDMAALRLVDVSEKARKLFNLLNQSRDPRFHALPLASQRVAAFTDTVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQGAFPLPTFSAYPQSYVTSVGEYLLTLPQQLEPLAEGISNNEVNDEAQFFATEWMFKVAEGATALYIEQLRGIQYISDRGAQQLSVDIEYLSNVLSALSMPIPPVLATFQSCLSTPRNQLKDLLKTDSGNQLDLPTANLVCKMRRVNLDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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