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Report for Sequence Feature Glyma09g35780

Feature Type:gene_model
Chromosome:Gm09
Start:41691711
stop:41695789
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g35780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10110AT Annotation by Michelle Graham. TAIR10: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:3116225-3117378 FORWARD LENGTH=173 SoyBaseE_val: 4.00E-69ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0005744GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0015450GO-mf Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity SoyBaseN/AISS
KOG3225 KOG Mitochondrial import inner membrane translocase, subunit TIM22 JGI ISS
PTHR14110Panther TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE TIM22 JGI ISS
PF02466PFAM Tim17/Tim22/Tim23 family JGI ISS
UniRef100_G7JSS1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Medicago truncatula RepID=G7JSS1_MEDTR SoyBaseE_val: 2.00E-103ISS
UniRef100_I1L5H5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5H5_SOYBN SoyBaseE_val: 8.00E-121ISS

Expression Patterns of Glyma09g35780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g35780 not represented in the dataset
Glyma09g35780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g35780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g223900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g35780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g35780
>Glyma09g35780.1   sequence type=CDS   gene model=Glyma09g35780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATGACTCTGCTAAAGGAATTGAAAATGCTTCTTTGAACTCAACACGACTAGAGAACCCTCAGATTGAGCCCATAAGACTGCCCTCGGTAGAGGAAATCCGTGGTCAAGACATTTGGAACAATTGTGCAGTGCGCAGTGTTGTCAGTGGAGTCATGGGTGGCGGGCTTGGCATCTTCATGGGTTTATTTCTTGGAGCACTGGACAACCCATTGATGCAGGAGGAAATGACCGGCAGACAACAGCTTATATATCAAGCAAAACAGATGGGGCGAAGGAGTTGGAGTTCAGCCAAAGCATTTGCTGTTATGGGTTTCATATTCTCAGCTGCCGAGTGTGTTGTTGAGAAGGCTCGAGCAAAACATGACATAACAAATACCGTTGTTGCTGGATGTGCAACTGGAGGTGCAATATCAGCAAAAGGTGGCCCAAAAGCAGCGTGTGCTGGTTGTGCTGGCTTTGCGGCATTCTCAGTCGTAATAGAGAAGTTTTTGGAGAGACATCAATAA
Predicted protein sequences of Glyma09g35780
>Glyma09g35780.1   sequence type=predicted peptide   gene model=Glyma09g35780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADDSAKGIENASLNSTRLENPQIEPIRLPSVEEIRGQDIWNNCAVRSVVSGVMGGGLGIFMGLFLGALDNPLMQEEMTGRQQLIYQAKQMGRRSWSSAKAFAVMGFIFSAAECVVEKARAKHDITNTVVAGCATGGAISAKGGPKAACAGCAGFAAFSVVIEKFLERHQ*






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