SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25200 | AT | Annotation by Michelle Graham. TAIR10: mitochondrion-localized small heat shock protein 23.6 | chr4:12917089-12917858 FORWARD LENGTH=210 | SoyBase | E_val: 4.00E-11 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR11527 | Panther | SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY | JGI | ISS | |
| PTHR11527:SF17 | Panther | HEAT-SHOCK PROTEIN 22 | JGI | ISS | |
| PF00011 | PFAM | Hsp20/alpha crystallin family | JGI | ISS | |
| UniRef100_I1L5H4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5H4_SOYBN | SoyBase | E_val: 6.00E-70 | ISS |
| UniRef100_Q39818 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heat shock 22 kDa protein, mitochondrial n=1 Tax=Glycine max RepID=HS22M_SOYBN | SoyBase | E_val: 2.00E-19 | ISS |
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Glyma09g35770 not represented in the dataset |
Glyma09g35770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g01580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g223800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g35770.2 sequence type=CDS gene model=Glyma09g35770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCCTCTCTCATTCTGAAGCGCTTTGTCTACTCTTCACTTCTTTCCTGCAAGTCTCCCACTCTCCTTCGCCCCGCCGCTTCCGCTTCCCACCGCTCCTTCAACGACCACGCCGATGACAACGACGATCGTGGCTCTCGCTCAGGTACGCGTGTTGGATTCGAGCCAGGTTCTGAACATGATGAATCTCGTCGCGGATGGGAGTGGGACGCGAAAGAGACGAAGGATGTTCTGCTTCTCCGCGTGAACATGCCTGGGCTCGGAAAGGAACATGTGAAGATCTCGGTGGAGCAGAACACTCTCGCCGTCAAAGGTGAAGGCGACGAGAAATAG
>Glyma09g35770.2 sequence type=predicted peptide gene model=Glyma09g35770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSLILKRFVYSSLLSCKSPTLLRPAASASHRSFNDHADDNDDRGSRSGTRVGFEPGSEHDESRRGWEWDAKETKDVLLLRVNMPGLGKEHVKISVEQNTLAVKGEGDEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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