SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16570 | AT | Annotation by Michelle Graham. TAIR10: GLN phosphoribosyl pyrophosphate amidotransferase 1 | chr2:7180424-7182124 REVERSE LENGTH=566 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009113 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleobase biosynthetic process | SoyBase | N/A | ISS |
| GO:0009116 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009532 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004044 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amidophosphoribosyltransferase activity | SoyBase | N/A | ISS |
| KOG0572 | KOG | Glutamine phosphoribosylpyrophosphate amidotransferase | JGI | ISS | |
| PTHR11907 | Panther | AMIDOPHOSPHORIBOSYLTRANSFERASE | JGI | ISS | |
| PF00156 | PFAM | Phosphoribosyl transferase domain | JGI | ISS | |
| PF00310 | PFAM | Glutamine amidotransferases class-II | JGI | ISS | |
| UniRef100_I1L5G3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Amidophosphoribosyltransferase n=1 Tax=Glycine max RepID=I1L5G3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023382E0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023382E0 related cluster n=1 Tax=unknown RepID=UPI00023382E0 | SoyBase | E_val: 0 | ISS |
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Glyma09g35660 not represented in the dataset |
Glyma09g35660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g222600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g35660.2 sequence type=CDS gene model=Glyma09g35660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTTAGCAGTAGCAGCACCCACTCTATCATCTTTCCTTTCCAAACCGTCTTCACTCCTTTTCTACACTCACCCTTTCCCCAAAACCCCCACTCTCCCTCTCCAGCTCGTTTTCTCCAAAAACCCGATTTCCGATACTGTGGGAAGCTACGACGATGATAAGCCGCGCGAGGAATGCGGCGTGGTTGGCATATACGGTGACCCGGAGGCCTCGCGGCTCTGCTACCTTGCCCTGCATGCGCTCCAGCATCGCGGCCAAGAAGGCGCCGGAATCGTAACCGTCCACAACAATGTCCTCCAACCACCCATCACTGGCATGGGCCTGGTCTCCGAAGTTTTCAACCAATCAAAGCTTGACCAGCTCCCTGGCAACCTCGCCATCGGCCACGTCCGCTACTCCACCGCCGGCCAGTCCATGCTCAAAAACGTCCAGCCCTTCGTCGCCGGCTACCGCTTCGGCTCCGTCGGCCTGGCCCACAACGGCAACCTCGTCAACTATAAGACTCTCCGAACCAACCTCGAGGACAGCGGCTCCATCTTCAACACCTCCTCCGACACCGAGGTTGTCCTCCACCTCATCGCCACCTCCAAACACGGACCCTTCATTCTGCGAGTTGTTGACGCCTGTGAAAAGCTAAAAGGGGCTTATTCTTTTGTCTTCGTCACCGAGGACAAACTTGTCGCCGTGCGCGACCCTTTCGGGTTCAGGCCTTTGGTTATGGGAAGGAGGAGAAGCAACGGTGCCGTAGTTTTCACTTCTGAAACTTGTGCTCTTGACCTAATTGAAGCGACTTATGAGAGGGAGGTTTACCCTGGTGAGGTTATCGTGGTGGATAAAAACGGTATTCAGAGTATGCAGCTCATGTCGTCTTCTCATCCGAAACAACAGTGCATATTTGAACATGTTTACTTTTCGCGGCCGAATTCAGTTGTCTTTGGGAGGTCTGTGTATGAGACTCGTAGAAAATTCGGGGAGATTTTGGCTACTGAGAGTCCCGTGGAAGAGTGTGATGTTGTGATTGCTGTGCCTGATTCTGGTGTTGTGTCAGCGATTGGTTTTGCTGCAAAAGCTGGAGTTCCCTACGAGGTGGGTTTGATTAGGTCACAAAATGTGGCGAGGACTTTCATTGCCCCATCACAGGAGATTAGGGACATTGGTGTGAAGCTGAAGCTATGGCCAGTTCGTGCAGTGCTAGAAGGTAAAAGTGTTACGGTTGTGGATGATTCCATTGTGAGAGGAACAACCTCGTCCAAGATTGTTAGGTTGTTGAGAGAGGCAGGTGCTAAGGAAGTTCACATGAGGATTGCGAGTCCTCCCATAATTGCTTCCTGTTATTATGGAGTGGATACTCCCAATTCTCAAGAGCTCATATCGAGTAAGATGAGTGTGGAGGAGATAAGAGACTTTATTGGGGCGGATTCACTTGCCTTTTTGTCCTTTGATAGCTTGAAGACCTTGTTGGGAACTCAGAGTCCCAATTTTTGTTATGCTTGTTTCTCTGGGAATTACCCTCTGGATCCTAGTGAGACTTAA
>Glyma09g35660.2 sequence type=predicted peptide gene model=Glyma09g35660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALAVAAPTLSSFLSKPSSLLFYTHPFPKTPTLPLQLVFSKNPISDTVGSYDDDKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVTVHNNVLQPPITGMGLVSEVFNQSKLDQLPGNLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGLAHNGNLVNYKTLRTNLEDSGSIFNTSSDTEVVLHLIATSKHGPFILRVVDACEKLKGAYSFVFVTEDKLVAVRDPFGFRPLVMGRRRSNGAVVFTSETCALDLIEATYEREVYPGEVIVVDKNGIQSMQLMSSSHPKQQCIFEHVYFSRPNSVVFGRSVYETRRKFGEILATESPVEECDVVIAVPDSGVVSAIGFAAKAGVPYEVGLIRSQNVARTFIAPSQEIRDIGVKLKLWPVRAVLEGKSVTVVDDSIVRGTTSSKIVRLLREAGAKEVHMRIASPPIIASCYYGVDTPNSQELISSKMSVEEIRDFIGADSLAFLSFDSLKTLLGTQSPNFCYACFSGNYPLDPSET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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