Glyma09g35610 - SoyBase

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Report for Sequence Feature Glyma09g35610

Feature Type:	gene_model
Chromosome:	Gm09
Start:	41579064
stop:	41581770
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g35610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45600	AT	Annotation by Michelle Graham. TAIR10: YEATS family protein \| chr5:18488059-18489666 FORWARD LENGTH=267	SoyBase	E_val: 5.00E-50	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0048510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase	SoyBase	N/A	ISS
GO:0090239	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of histone H4 acetylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR23195	Panther	YEATS DOMAIN	JGI		ISS
PTHR23195:SF15	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03366	PFAM	YEATS family	JGI		ISS
UniRef100_G7JL17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: YEATS domain-containing protein n=2 Tax=Medicago truncatula RepID=G7JL17_MEDTR	SoyBase	E_val: 4.00E-59	ISS
UniRef100_I1L5F9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5F9_SOYBN	SoyBase	E_val: 4.00E-70	ISS

Expression Patterns of Glyma09g35610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g35610 not represented in the dataset	Glyma09g35610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g35610

Paralog	Evidence	Comments
Glyma12g03980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g35610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g222100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g35610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g35610

Limit To All Plant Sequences

>Glyma09g35610.3   sequence type=transcript   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGCGTAATTTTGACAGACACACACAAACCCTAGCTAGAACTTGATGCTCAGATTCAGCTTCTATCTTTGAGACGAGGAGGTCGTTGATTGATATGATAAGACCAAAAGCTCATGTTCGATAAAGCACCGTCAAGAACAGCCTGAATTTAGTGGTCCTACCCCTAAATCACAGCGAACCAAAATGGGCAAATCCGAAGACAACGATAAGAAGAACTTAGGTAAGAAACTCAAAGATGTGGAAATAAGCATTCCAATAGTGTATGGGAACATAGCAATTTGGCTTGGCAAAAAGGCTAGCGAGTATCAGTCGCATAAATGGACAGTAAATGTTCGTGGAGCAACCAATGAGGATCTTGGGACGATAATAAAGCATGCTGTTTTTCAGCTGCATTCTAGTTTCAATAATCCCACACGTGTGGTGGAGTCGCCGCCTTTTGAATTGTCAGAGTCAGGATGGGGGGAATTTGAAGTTGCCATCACACTTTATTTCCAGTGATGTTTGTGACAAGCCTTTGAACTTGTGAGTTGTTGGGTACTGCTTACTTTGGATTTAGTAGCTGGTTATTGAGCCTCTGTTGATTTCTTGATTCAGTATAGAGGTTCAAAATATGCTCAAAAATACTCTGGGTAGGCAAAATGGAAACTGAATTTCTATGTGTCATCAATAAGTGCAGTTATTTTATGCTTCCGATGGGTTAAGGTCAAGCTCATATTGCTAAACTCAGACGACAGATAAGCTTGATAGATGGACAGCATCAGCAGTTTAAATCTTCTTCTGACCAGTAGGTGTACAATTAGGATCTGACGTTTATTTTCTAATTACTGAGAGAGCAGAAGAATGGGATGGTTATATGCTTCTGATCAGCTAGTTGTTTCTTCAGCTGTATTGTAACTTATTTCATTTTTTTTTGGGCGGTGTTGTAATCTAAGAGCACTGTACCTTTTGCCAATAAACATAAGCAGCCAAATGTGTATGATTTAATCATAAAATATTGAAAGATGTCCTTTTTTATTTCTGATAATATATATTCAAT

>Glyma09g35610.4   sequence type=transcript   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTAAGTGATGATGGATCAGAGAGAGTTAAGAAACGACGTCGTAAAAGCCATGAACTGTGCAGCGTAATTTTGACAGACACACACAAACCCTAGCTAGAACTTGATGCTCAGATTCAGCTTCTATCTTTGAGACGAGGAGGTCGTTGATTGATATGATAAGACCAAAAGCTCATGTTCGATAAAGCACCGTCAAGAACAGCCTGAATTTAGTGGTCCTACCCCTAAATCACAGCGAACCAAAATGGGCAAATCCGAAGACAACGATAAGAAGAACTTAGGTAAGAAACTCAAAGATGTGGAAATAAGCATTCCAATAGTGTATGGGAACATAGCAATTTGGCTTGGCAAAAAGGCTAGCGAGTATCAGTCGCATAAATGGACAGTAAATGTTCGTGGAGCAACCAATGAGGATCTTGGGACGATAATAAAGCATGCTGTTTTTCAGCTGCATTCTAGTTTCAATAATCCCACACGTGTGGTGGAGTCGCCGCCTTTTGAATTGTCAGAGTCAGGATGGGGGGAATTTGAAGTTGCCATCACACTTTATTTCCAGTGATGTTTGTGACAAGCCTTTGAACTTTTATTTTATGCTTCCGATGGGTTAAGGTCAAGCTCATATTGCTAAACTCAGACGACAGATAAGCTTGATAGATGGACAGCATCAGCAGTTTAAATCTTCTTCTGACCAGTAGGTGTACAATTAGGATCTGACGTTTATTTTCTAATTACTGAGAGAGCAGAAGAATGGGATGGTTATATGCTTCTGATCAGCTAGTTGTTTCTTCAGCTGTATTGTAACTTATTTCATTTTTTTTTGGGCGGTGTTGTAATCTAAGAGCACTGTACCTTTTGCCAATAAACATAAGCAGCCAAATGTGTATGATTTAATCATAAAATATTGAAAGATGTCCTTTTTTATTTCTGATAATATATATTCAATATAGCTATCAAATTTAGAAA

>Glyma09g35610.5   sequence type=transcript   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAATTTTGACAGACACACACAAACCCTAGCTAGAACTTGATGCTCAGATTCAGCTTCTATCTTTGAGACGAGGAGGTCGTTGATTGATATGATAAGACCAAAAGCTCATGTTCGATAAAGCACCGTCAAGAACAGCCTGAATTTAGTGGTCCTACCCCTAAATCACAGCGAACCAAAATGGGCAAATCCGAAGACAACGATAAGAAGAACTTAGGTAAGAAACTCAAAGATGTGGAAATAAGCATTCCAATAGTGTATGGGAACATAGCAATTTGGCTTGGCAAAAAGGCTAGCGAGTATCAGTCGCATAAATGGACAGTAAATGTTCGTGGAGCAACCAATGAGGATCTTGGGACGATAATAAAGCATGCTGTTTTTCAGCTGCATTCTAGTTTCAATAATCCCACACGTGTGGTGGAGTCGCCGCCTTTTGAATTGTCAGAGTCAGGATGGGGGGAATTTGAAGTTGCCATCACACTTTATTTCCAGTGATGTTTGTGACAAGCCTTTGAACTTAGGTTCAAAATATGCTCAAAAATACTCTGGGTAGGCAAAATGGAAACTGAATTTCTATGTGTCATCAATAAGTGCAGTTATTTTATGCTTCCGATGGGTTAAGGTCAAGCTCATATTGCTAAACTCAGACGACAGATAAGCTTGATAGATGGACAGCATCAGCAGTTTAAATCTTCTTCTGACCAGTAGGTGTACAATTAGGATCTGACGTTTATTTTCTAATTACTGAGAGAGCAGAAGAATGGGATGGTTATATGCTTCTGATCAGCTAGTTGTTTCTTCAGCTGTATTGTAACTTATTTCATTTTTTTTTGGGCGGTGTTGTAATCTAAGAGCACTGTACCTTTTGCCAATAAACATAAGCAGCCAAATGTGTATGATTTAATCATAAAATATTGAAAGATGTCCTTTTTTATTTCTGATAATATATATTCAAT

Coding sequences of Glyma09g35610

Limit To All Plant Sequences

>Glyma09g35610.2   sequence type=CDS   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAAATCCGAAGACAACGATAAGAAGAACTTAGGTAAGAAACTCAAAGATGTGGAAATAAGCATTCCAATAGTGTATGGGAACATAGCAATTTGGCTTGGCAAAAAGGCTAGCGAGTATCAGTCGCATAAATGGACAGTAAATGTTCGTGGAGCAACCAATGAGGATCTTGGGACGATAATAAAGCATGCTGTTTTTCAGCTGCATTCTAGTTTCAATAATCCCACACGTGTGGTGGAGTCGCCGCCTTTTGAATTGTCAGAGTCAGGATGGGGGGAATTTGAAGTTGCCATCACACTTTATTTCCAGTGA

>Glyma09g35610.3   sequence type=CDS   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAAATCCGAAGACAACGATAAGAAGAACTTAGGTAAGAAACTCAAAGATGTGGAAATAAGCATTCCAATAGTGTATGGGAACATAGCAATTTGGCTTGGCAAAAAGGCTAGCGAGTATCAGTCGCATAAATGGACAGTAAATGTTCGTGGAGCAACCAATGAGGATCTTGGGACGATAATAAAGCATGCTGTTTTTCAGCTGCATTCTAGTTTCAATAATCCCACACGTGTGGTGGAGTCGCCGCCTTTTGAATTGTCAGAGTCAGGATGGGGGGAATTTGAAGTTGCCATCACACTTTATTTCCAGTGA

>Glyma09g35610.4   sequence type=CDS   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAAATCCGAAGACAACGATAAGAAGAACTTAGGTAAGAAACTCAAAGATGTGGAAATAAGCATTCCAATAGTGTATGGGAACATAGCAATTTGGCTTGGCAAAAAGGCTAGCGAGTATCAGTCGCATAAATGGACAGTAAATGTTCGTGGAGCAACCAATGAGGATCTTGGGACGATAATAAAGCATGCTGTTTTTCAGCTGCATTCTAGTTTCAATAATCCCACACGTGTGGTGGAGTCGCCGCCTTTTGAATTGTCAGAGTCAGGATGGGGGGAATTTGAAGTTGCCATCACACTTTATTTCCAGTGA

>Glyma09g35610.5   sequence type=CDS   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAAATCCGAAGACAACGATAAGAAGAACTTAGGTAAGAAACTCAAAGATGTGGAAATAAGCATTCCAATAGTGTATGGGAACATAGCAATTTGGCTTGGCAAAAAGGCTAGCGAGTATCAGTCGCATAAATGGACAGTAAATGTTCGTGGAGCAACCAATGAGGATCTTGGGACGATAATAAAGCATGCTGTTTTTCAGCTGCATTCTAGTTTCAATAATCCCACACGTGTGGTGGAGTCGCCGCCTTTTGAATTGTCAGAGTCAGGATGGGGGGAATTTGAAGTTGCCATCACACTTTATTTCCAGTGA

Predicted protein sequences of Glyma09g35610

Limit To All Plant Sequences

>Glyma09g35610.2   sequence type=predicted peptide   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKSEDNDKKNLGKKLKDVEISIPIVYGNIAIWLGKKASEYQSHKWTVNVRGATNEDLGTIIKHAVFQLHSSFNNPTRVVESPPFELSESGWGEFEVAITLYFQ*

>Glyma09g35610.3   sequence type=predicted peptide   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKSEDNDKKNLGKKLKDVEISIPIVYGNIAIWLGKKASEYQSHKWTVNVRGATNEDLGTIIKHAVFQLHSSFNNPTRVVESPPFELSESGWGEFEVAITLYFQ*

>Glyma09g35610.4   sequence type=predicted peptide   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKSEDNDKKNLGKKLKDVEISIPIVYGNIAIWLGKKASEYQSHKWTVNVRGATNEDLGTIIKHAVFQLHSSFNNPTRVVESPPFELSESGWGEFEVAITLYFQ*

>Glyma09g35610.5   sequence type=predicted peptide   gene model=Glyma09g35610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKSEDNDKKNLGKKLKDVEISIPIVYGNIAIWLGKKASEYQSHKWTVNVRGATNEDLGTIIKHAVFQLHSSFNNPTRVVESPPFELSESGWGEFEVAITLYFQ*

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