|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G31360 | AT | Annotation by Michelle Graham. TAIR10: RECQ helicase L2 | chr1:11232422-11237412 FORWARD LENGTH=705 | SoyBase | E_val: 0 | ISS |
GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0016592 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mediator complex | SoyBase | N/A | ISS |
GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
GO:0009378 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: four-way junction helicase activity | SoyBase | N/A | ISS |
GO:0043138 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-5' DNA helicase activity | SoyBase | N/A | ISS |
GO:0043140 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent 3'-5' DNA helicase activity | SoyBase | N/A | ISS |
KOG0353 | KOG | ATP-dependent DNA helicase | JGI | ISS | |
PTHR13710 | Panther | DNA HELICASE RECQ FAMILY MEMBER | JGI | ISS | |
PTHR13710:SF12 | Panther | RECQ HELICASE 5 | JGI | ISS | |
PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
PF00570 | PFAM | HRDC domain | JGI | ISS | |
PF09382 | PFAM | RQC domain | JGI | ISS | |
UniRef100_B9S1J8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA helicase recq1, putative n=1 Tax=Ricinus communis RepID=B9S1J8_RICCO | SoyBase | E_val: 0 | ISS |
UniRef100_UPI0002337E8D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337E8D related cluster n=1 Tax=unknown RepID=UPI0002337E8D | SoyBase | E_val: 0 | ISS |
Glyma09g34860 not represented in the dataset |
Glyma09g34860 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.09g215200 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g34860.2 sequence type=transcript gene model=Glyma09g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGGCTGCTGCAATTTTTTCTTGCAACAATACATAAGCATCGAAGTTCAAGCAAGCGTGGGGGTTTTAGGGTTGCTTCGCCGTGCCCTCACACTCACACTGTTCTGAGATGGAGAATAACGAGATTCTAGAGGAGCTTCTCAACATCGAGGTTGAAATTCAAGATGTCCAAGAACAAATAAGGGCTTTGATCGAGAGGCAAGAGAGTTTGTACGAGAGAAAATCGGAGCTGAGTGCTATTCTGGAAGCGTGTAAGGAATCTGGAAACGAGGCCAATAATGCGGCTTCGAGCGCTGCGGAAAATTGGAGTGGGGAATTTGAATGGGATTCTGAAGCTGATGATGTTAGGTTGAATGTTTTTGGCATTTCCTCCTACCGTGCAAATCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACCGCTTTGGGCATTCCAGCGTATATGTTGACTTCAACTAATAAGGGAGATGAGAAGTTCATATATAAGACTTTGGAGAAGGGAGAGGGGGAACTCAAAATATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCTAGATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTATATTGCTTCTCAAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTGAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCCGATATGGATGTAAATGCTCGGGAAAAAGTCCACATGCGGTGGAGCAATAACAAGCTGCAGGTCATTGTTGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTACTGTACTTTAGACCCGGTGATGCTCCACGTCAGAGCTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATTGTACGATATTGTCTGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCATCATTTTGCTGAGCCACTTCAAGAGTGCAATGGGATGTGCGACATCTGTGCATTCTCAAGTGAGGTGAAGGAAGTAGATGTCTCTGGTCATGCAAAACTGATGGTTTCATTGTTGCAAGATATGCAAGCAAATGATCAAAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAACGGGAGGAAATTGAGCAGCTCATCTTACACCTTTTACTGGCACGGTTTTTGAAAGAAGAATTTCAGCATACACCTTATGCCACAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGCAAATATTGCAAGGGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGAGAACTAAAGATGGTGTAAGGTCAGCGAAACAGTGTCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTGTCCTCTGCTCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTGAACAAATCATCCAATTAGCTTCTCAAAAACCAAACTCGCTGGAACAGTTGGAGAAGCTGATTGGAAAATTGAGGACAGAAAAGTATGGAAATAGAATACTAAAGCAAATTGAAAAATATTATGATTTCGAGCCGACTGATAAACAAGAAATTGATGCTAGGGCCGCAAAGAGGTTGAAGAGCAAGAAAAATCTTGTTATTATTGAATAGTGAAGATGAAGAGTGATAGCTGGTGGTGTCCCTGCGGCAATATATGGTTTATTTGTATAGCATGGCACTATTGAGTATATTCATTCTTACAAACCGTGCTTCTGGCTCATCCTAAAGAGGAAAAGGAATCTGGATGACAAATGGCAGAGGGTCTTGACTGTCCTTATCTATAATAACAGTTGATAAAATCGAAAGTAGATTTATGTAGGGCTGTTCAAATAAACTACTCATTCCACGCATTATAATTGTTGTCCTTAATTGTTTTACTCAAACCAAGAAAAACTAATAAATGAATTAAAAAATATATTAATTTTACAAAATGGAC
>Glyma09g34860.1 sequence type=CDS gene model=Glyma09g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAATAACGAGATTCTAGAGGAGCTTCTCAACATCGAGGTTGAAATTCAAGATGTCCAAGAACAAATAAGGGCTTTGATCGAGAGGCAAGAGAGTTTGTACGAGAGAAAATCGGAGCTGAGTGCTATTCTGGAAGCGTGTAAGGAATCTGGAAACGAGGCCAATAATGCGGCTTCGAGCGCTGCGGAAAATTGGAGTGGGGAATTTGAATGGGATTCTGAAGCTGATGATGTTAGGTTGAATGTTTTTGGCATTTCCTCCTACCGTGCAAATCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACCGCTTTGGGCATTCCAGCGTATATGTTGACTTCAACTAATAAGGGAGATGAGAAGTTCATATATAAGACTTTGGAGAAGGGAGAGGGGGAACTCAAAATATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCTAGATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTATATTGCTTCTCAAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTGAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCCGATATGGATGTAAATGCTCGGGAAAAAGTCCACATGCGGTGGAGCAATAACAAGCTGCAGGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTACTGTACTTTAGACCCGGTGATGCTCCACGTCAGAGCTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATTGTACGATATTGTCTGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCATCATTTTGCTGAGCCACTTCAAGAGTGCAATGGGATGTGCGACATCTGTGCATTCTCAAGTGAGGTGAAGGAAGTAGATGTCTCTGGTCATGCAAAACTGATGGTTTCATTGTTGCAAGATATGCAAGCAAATGATCAAAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAACGGGAGGAAATTGAGCAGCTCATCTTACACCTTTTACTGGCACGGTTTTTGAAAGAAGAATTTCAGCATACACCTTATGCCACAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGCAAATATTGCAAGGGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGAGAACTAAAGATGGTGTAAGGTCAGCGAAACAGTGTCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTGTCCTCTGCTCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTGAACAAATCATCCAATTAGCTTCTCAAAAACCAAACTCGCTGGAACAGTTGGAGAAGCTGATTGGAAAATTGAGGACAGAAAAGTATGGAAATAGAATACTAAAGCAAATTGAAAAATATTATGATTTCGAGCCGACTGATAAACAAGAAATTGATGCTAGGGCCGCAAAGAGGTTGAAGAGCAAGAAAAATCTTGTTATTATTGAATAG >Glyma09g34860.2 sequence type=CDS gene model=Glyma09g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAATAACGAGATTCTAGAGGAGCTTCTCAACATCGAGGTTGAAATTCAAGATGTCCAAGAACAAATAAGGGCTTTGATCGAGAGGCAAGAGAGTTTGTACGAGAGAAAATCGGAGCTGAGTGCTATTCTGGAAGCGTGTAAGGAATCTGGAAACGAGGCCAATAATGCGGCTTCGAGCGCTGCGGAAAATTGGAGTGGGGAATTTGAATGGGATTCTGAAGCTGATGATGTTAGGTTGAATGTTTTTGGCATTTCCTCCTACCGTGCAAATCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACCGCTTTGGGCATTCCAGCGTATATGTTGACTTCAACTAATAAGGGAGATGAGAAGTTCATATATAAGACTTTGGAGAAGGGAGAGGGGGAACTCAAAATATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCTAGATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTATATTGCTTCTCAAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTGAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCCGATATGGATGTAAATGCTCGGGAAAAAGTCCACATGCGGTGGAGCAATAACAAGCTGCAGGTCATTGTTGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTACTGTACTTTAGACCCGGTGATGCTCCACGTCAGAGCTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATTGTACGATATTGTCTGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCATCATTTTGCTGAGCCACTTCAAGAGTGCAATGGGATGTGCGACATCTGTGCATTCTCAAGTGAGGTGAAGGAAGTAGATGTCTCTGGTCATGCAAAACTGATGGTTTCATTGTTGCAAGATATGCAAGCAAATGATCAAAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAACGGGAGGAAATTGAGCAGCTCATCTTACACCTTTTACTGGCACGGTTTTTGAAAGAAGAATTTCAGCATACACCTTATGCCACAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGCAAATATTGCAAGGGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGAGAACTAAAGATGGTGTAAGGTCAGCGAAACAGTGTCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTGTCCTCTGCTCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTGAACAAATCATCCAATTAGCTTCTCAAAAACCAAACTCGCTGGAACAGTTGGAGAAGCTGATTGGAAAATTGAGGACAGAAAAGTATGGAAATAGAATACTAAAGCAAATTGAAAAATATTATGATTTCGAGCCGACTGATAAACAAGAAATTGATGCTAGGGCCGCAAAGAGGTTGAAGAGCAAGAAAAATCTTGTTATTATTGAATAG
>Glyma09g34860.1 sequence type=predicted peptide gene model=Glyma09g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENNEILEELLNIEVEIQDVQEQIRALIERQESLYERKSELSAILEACKESGNEANNAASSAAENWSGEFEWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKTLEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPRVPIVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDAPRQSSMVFYENSGLQNLYDIVRYCLSKRQCRRSAFFHHFAEPLQECNGMCDICAFSSEVKEVDVSGHAKLMVSLLQDMQANDQRSTMLQLVDKMKIKQKELGSELKREEIEQLILHLLLARFLKEEFQHTPYATNAYIAVGSLAKQILQGKKSVKLEIYTEQRTKDGVRSAKQCLGSSGLELKLDELRKELSSAHGGILPHSVLSTEQIIQLASQKPNSLEQLEKLIGKLRTEKYGNRILKQIEKYYDFEPTDKQEIDARAAKRLKSKKNLVIIE* >Glyma09g34860.2 sequence type=predicted peptide gene model=Glyma09g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENNEILEELLNIEVEIQDVQEQIRALIERQESLYERKSELSAILEACKESGNEANNAASSAAENWSGEFEWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKTLEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPRVPIVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDAPRQSSMVFYENSGLQNLYDIVRYCLSKRQCRRSAFFHHFAEPLQECNGMCDICAFSSEVKEVDVSGHAKLMVSLLQDMQANDQRSTMLQLVDKMKIKQKELGSELKREEIEQLILHLLLARFLKEEFQHTPYATNAYIAVGSLAKQILQGKKSVKLEIYTEQRTKDGVRSAKQCLGSSGLELKLDELRKELSSAHGGILPHSVLSTEQIIQLASQKPNSLEQLEKLIGKLRTEKYGNRILKQIEKYYDFEPTDKQEIDARAAKRLKSKKNLVIIE*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||