SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31810 | AT | Annotation by Michelle Graham. TAIR10: Formin Homology 14 | chr1:11399922-11405761 REVERSE LENGTH=1230 | SoyBase | E_val: 0 | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0016043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular component organization | SoyBase | N/A | ISS |
| GO:0030036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005819 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0009574 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: preprophase band | SoyBase | N/A | ISS |
| GO:0003779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin binding | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| GO:0051015 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin filament binding | SoyBase | N/A | ISS |
| KOG1922 | KOG | Rho GTPase effector BNI1 and related formins | JGI | ISS | |
| PTHR23213 | Panther | FORMIN-RELATED | JGI | ISS | |
| PTHR23213:SF18 | Panther | FORMIN-RELATED | JGI | ISS | |
| PF02181 | PFAM | Formin Homology 2 Domain | JGI | ISS | |
| PF10409 | PFAM | C2 domain of PTEN tumour-suppressor protein | JGI | ISS | |
| UniRef100_G7K6S2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Formin-like protein (Fragment) n=1 Tax=Medicago truncatula RepID=G7K6S2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233815C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233815C related cluster n=1 Tax=unknown RepID=UPI000233815C | SoyBase | E_val: 0 | ISS |
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Glyma09g34830 not represented in the dataset |
Glyma09g34830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g14770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g215100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g34830.1 sequence type=CDS gene model=Glyma09g34830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCCTTCTCAGCCGATTCTTCTACAAGCGCCCCCCTGACGGCTTACTCGAATTCTCCGACAGAGTATACGTCTTCGATTCCTGCTTCTCGACGGAGGCACTCCCGGACGGAATGTACAGCCTCTACCTCCGCCAAATCCTCTCTGACCTCCACGAGGACTTCCCGGAATCCTCCTTCGTGGCCCTCAACTTTCGCGACGGCGACCACCGCAGCCGTTTCTCCCGCGTCCTCTGCGACCTGGACGCCACATTCGTCGTCGACTACCCAAAGCAGTACGAGGGCTGCCCCCTCCTCCCCCTCTCCCTCCTCCACCACTTCCTCCGCCTTTGCGACTCCTGCCTCGCCGACCCCGGCGCCCTGATCCTCCTCCACTGCGAGCGCGGCGGCTGGCCCCTCCTCGCCTTCCTCCTCGCCGCCTTCCTCGTCTTCCGCAAGGCCGCGCAGACCGGGGAGCGCCGGATTCTCGAGATGGTTCATAAGGAGGCGCCGAAAGGGTTGCTGCAGCTGTTGTCGGCGCTGAACCCGCTGCCGTCGCAGCTGCGGTATGTGAAGTATGTGGCCAGGAGGAACATTGGGGCGGAGTGGCCCCCACCGGAGAGGGCACTGTCTTTGGATTGTGTTATTCTCAGAGGGGTTCCTGGGTTTGATGGGGGCAATGGGTGCAGGCCACTGTTTAGGATTTTTGGCCGGAATTTGCTTAGTAAAGGGGGGCTTTCAACACAGATGATTTATAATATGCATAAGAAGAAGAAGACTTTGAGGCACTATAGACAGGCAGACTGTGATGTGATTAAGATTGATATTCAATGCCTAGTGAAAGGGGATGTGGTGTTGGAGTGTGTCCATTTGGATTTGGATCCGGAGAGGGAAGTGATGATGTTTCGGGTGATGTTCAACACGGCGTTTATTCGGTCCAACATTTTGATGCTGAATTCTGAGAACTTGGACATTCTTTGGGATTCGAAGGAGCGGTATCCGAAGGGCTTCCGGGCTGAGGTTTTGTTTGGGGAGGTTGAAAGCATAAGTCCTCCAAGGGCTCAAACAAGTATTTTAGATGGTGAGGTGAAAGGTGGATTGCCTATTGAGGCATTTTCGAGGGTTCAAGAACTTTTTAGTGGTGTAGAATGGGTTGAAAGTGGGGATGCTGCTGCTGCCTGGCTGCTCAAACAGCTTACAGTCTTAAATGATGCCAAAGAGCTTTCAAGGTTTCAAGGTAGAGGAAGTTGGTATTCATCACCTGCTGACTCTGACTCTGAAAATAATGAATCAAGCACAGCTGATAGTTCAGATGAGGCCTTTGATGTTATTCCCAAGTCTTATGCTGATCCTTCAAAATTATTGATATCTGACAACCCTGATTTGGTCCATTTAGCTTTTGAGAACAATGGTGGAGATTATGTAAATCTCACTTCAAGAACACCTGATCAGTCATTGACTGATAATGTTTCATTACCTCATCATGCTCCCAGAAAGGAATATTCTCCTTGTTCCTCTCCACCATCACCTTCACCAGTTCCCGCTACTCAACCTTTTCCAACACCGGCACCACCACTTCCCACATCAATGCCTATACAGCCAGATTTAGCTCCTCCCTTGCCTCCGCATCAGATAGATCAGAATGTGAACAGTGCTTCTACATTGCCTTCACCTCCTCCTCCTATAGTTTCCAATGCTCCTAGTCAATCTCCACCGCCTCCTCCTCCTCCTCCACTTCCTCCACGATCTGTACAAACTGGTTCAGCTCCACCTCCTCCAGGACCTGTACGAACAGGCTCGGTACCACCGCCTCCACCTCCTCCAGGATCTGTACAAACTGGTTCAGCTCCACCACCTCCACCTCCTCCAGGTCCAGTACGAACAGGCTCGGTACCACCGCCTCCACCTCCTCCAGGATCTGTAAAAACTGGTTCAGCTCCACCACCTCCACCTCCTCCAAGTCCAGTACGAACAGGTTCAGCCCCACCGCCACCTCCACCTCCTCCATGTCCTGTACGAGCAGGTTCAGCCCCATCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGGTCCTGTACGAACAGGTTCAGCCCTACCTCCTCCTCCTCCTCCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCCCCACCTCCTCCTCCTCCTCCTCCTCTAGGTCCTGTACCAACAGGTCCAGCCCTACCTCCTCCTCCTCCTCCTCCTCCAGGTCCTGTACGAACAGGTTCAGCTCCACCACCTCCTCCCCCTCCAAGTGTACGAACAGGTTCAACTCCACCACCACCACCACCGGCACCAAAACCTCCAGGTGTTCTTCCTCCTCCACCTGGCCGTGGTGCATCACCGATGCCACCTCCACCACCTGCAGCTAGGGCCCCTGGTGTGGCACCACCACCAGGCAAAGCTTCAACAGCAAATGTTGGAAGAGGTCGTGGTACTGGTGGTACTGTTAATGCTCCTAAGAAAACTTTGCTAAAACCCCTACACTGGGTGAAAGTTGCTCGAGCAGCCAAGGGAAGTCTATGGGCTGATTCACAGAAACAGGATAGTGGAACAAGGGCTCCTGAGATAGATATTTCAGAACTTGAGAGCCTGTTTTCAGCAGCATCTACTTCTGATGGGAGCAGCACTAAAGGTGGAGGTCGGCGTGGTCCTAATATTAACAAACCTGAGAAAGTACAATTGGTTGATTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAAAGCAGTCCTGGCATTGGATTCTGCAATTCTGGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCTACAAAGGAAGAGATGGAGATGTTAAAGAATTATACAGGAAACAAGGAAATGCTTGGAAAGTGTGAACAGTTTTTTATGGAGCTGATGAAGGTTCCACGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCACCTTTTCTTCTCAGGTGAATGATTTGAAGTTAAATTTGAACACAATCAACAATGCAGCCAGAGAGGTGAAAGAATCTGGAAAATTGCGTCAAATAATGCAGACCATTCTTACTCTGGGCAATGCCTTGAATCAAGGAACAACACGAGGATCAGCTGTTGGATTCAAATTGGATAGCCTTCTTAAATTATCTGATACCCGTGCAAGAAATAACAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTTGCTGAGAAAATGCCAGAATTGCTAGATTTTGATAAGGATCTTGTCCATTTGGAAGCAGCTTCTAGGATTCAACTAAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCGCTGCTTCTGAAAATGATGGTGCTATATCTACAGGATTTCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGATGTGAGGTCTCTTATATCATTGTATTCTGAAGTGGGAAGAAGTGCAGACTCTTTGTCCCAGTACTTTGGAGAGGATCCAGCTAGATGCCCTTTTGAACAAGTGACACAAATCCTTGTTGTCTTTGTCAAGATGTTCAACAAGTCAAGGGAGGAAAATGAAAGGCAGGCGGATGCTGAAAAAAAGAAATTAGAGAAAGAAGCCTTGAAGGAAAGGACAGCAAATAACTTGCATTCCAAAAAAGATGGTGTTCGATAG
>Glyma09g34830.1 sequence type=predicted peptide gene model=Glyma09g34830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLLSRFFYKRPPDGLLEFSDRVYVFDSCFSTEALPDGMYSLYLRQILSDLHEDFPESSFVALNFRDGDHRSRFSRVLCDLDATFVVDYPKQYEGCPLLPLSLLHHFLRLCDSCLADPGALILLHCERGGWPLLAFLLAAFLVFRKAAQTGERRILEMVHKEAPKGLLQLLSALNPLPSQLRYVKYVARRNIGAEWPPPERALSLDCVILRGVPGFDGGNGCRPLFRIFGRNLLSKGGLSTQMIYNMHKKKKTLRHYRQADCDVIKIDIQCLVKGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNSENLDILWDSKERYPKGFRAEVLFGEVESISPPRAQTSILDGEVKGGLPIEAFSRVQELFSGVEWVESGDAAAAWLLKQLTVLNDAKELSRFQGRGSWYSSPADSDSENNESSTADSSDEAFDVIPKSYADPSKLLISDNPDLVHLAFENNGGDYVNLTSRTPDQSLTDNVSLPHHAPRKEYSPCSSPPSPSPVPATQPFPTPAPPLPTSMPIQPDLAPPLPPHQIDQNVNSASTLPSPPPPIVSNAPSQSPPPPPPPPLPPRSVQTGSAPPPPGPVRTGSVPPPPPPPGSVQTGSAPPPPPPPGPVRTGSVPPPPPPPGSVKTGSAPPPPPPPSPVRTGSAPPPPPPPPCPVRAGSAPSPPPPPPPPPGPVRTGSALPPPPPPPPPPGPVRTGSAPPPPPPPPLGPVPTGPALPPPPPPPPGPVRTGSAPPPPPPPSVRTGSTPPPPPPAPKPPGVLPPPPGRGASPMPPPPPAARAPGVAPPPGKASTANVGRGRGTGGTVNAPKKTLLKPLHWVKVARAAKGSLWADSQKQDSGTRAPEIDISELESLFSAASTSDGSSTKGGGRRGPNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLKAVLALDSAILDIDQVENLIKFCPTKEEMEMLKNYTGNKEMLGKCEQFFMELMKVPRVESKLRVFAFKITFSSQVNDLKLNLNTINNAAREVKESGKLRQIMQTILTLGNALNQGTTRGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASRIQLKALAEEMQAVSKGLEKVEQELAASENDGAISTGFRKVLKNFLDIAEADVRSLISLYSEVGRSADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERQADAEKKKLEKEALKERTANNLHSKKDGVR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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