Glyma09g34810 - SoyBase

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Report for Sequence Feature Glyma09g34810

Feature Type:	gene_model
Chromosome:	Gm09
Start:	41092949
stop:	41094457
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g34810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11760	AT	Annotation by Michelle Graham. TAIR10: MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:3972356-3972811 REVERSE LENGTH=151	SoyBase	E_val: 8.00E-65	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
PTHR21528	Panther	UNCHARACTERIZED	JGI		ISS
UniRef100_C6SY99	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SY99_SOYBN	SoyBase	E_val: 8.00E-103	ISS
UniRef100_Q84VW5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 32 n=1 Tax=Arabidopsis thaliana RepID=MED32_ARATH	SoyBase	E_val: 4.00E-62	ISS

Expression Patterns of Glyma09g34810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g34810

Paralog	Evidence	Comments
Glyma04g14710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g34810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g214900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g34810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g34810

Limit To All Plant Sequences

>Glyma09g34810.2   sequence type=transcript   gene model=Glyma09g34810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTATAGTAAAAAGCTTTTTTATATAAACCTTAACAGAACAGGGACAAACTAGAAAGGGGGTTTCTTTCATTTCAGATTTGGTTAATTAGGGTTCCGTTGGCGCGAGCTAAGAACGAACGAAGTAGAAGCAGCAAAACCCAATCAAAGACCCTCACTCTCACCCCACACTTCACGCACCATGGACAGCATAGTTGATTCTCTGAATAATGCCTATCAAGATTTTGTTGTTGCAGCAGCAAATGTGTTGGAAGCCAAAGAAAATGCTGGTTCCATTAAAACAACAGCAACCGATACTGCTCTAGAAAACTTTAAGCAGAAGTGGGAATTGTTTAGAGTAGCATGTGATCAAGCTGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGATCCGAGTGTCTGGTGGATGAGGCAACAAGGCCTGTAGCAGGAAAACCTGGACAAGCTACCATGACTGGTCTTCCTCCCATCAGTGCAGTTCGGTTGGAACAGATGAGTAAAGCAGTTCGATGGCTTGTGATTGAATTGCAGCATGGCTCTGGAGCTGGTTCTGCTAATTCAGCTCTTACCCACCCCTCAGCTCAGTTTGATGCCAGGTTTTCTGAAGATGCTGCTCAGTAGCATTAACGTGACTGTGATGATTAATGTTATATATTTTTTCTCTATGTTGATCGTGCTTAGACTATATTGTTGGT

Coding sequences of Glyma09g34810

Limit To All Plant Sequences

>Glyma09g34810.1   sequence type=CDS   gene model=Glyma09g34810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGCATAGTTGATTCTCTGAATAATGCCTATCAAGATTTTGTTGTTGCAGCAGCAAATGTGTTGGAAGCCAAAGAAAATGCTGGTTCCATTAAAACAACAGCAACCGATACTGCTCTAGAAAACTTTAAGCAGAAGTGGGAATTGTTTAGAGTAGCATGTGATCAAGCTGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGATCCGAGTGTCTGGTGGATGAGGCAACAAGGCCTGTAGCAGGAAAACCTGGACAAGCTACCATGACTGGTCTTCCTCCCATCAGTGCAGTTCGGTTGGAACAGATGAGTAAAGCAGTTCGATGGCTTGTGATTGAATTGCAGCATGGCTCTGGAGCTGGTTCTGCTAATTCAGCTCTTACCCACCCCTCAGCTCAGTTTGATGCCAGGTTTTCTGAAGATGCTGCTCAGTAG

>Glyma09g34810.2   sequence type=CDS   gene model=Glyma09g34810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGCATAGTTGATTCTCTGAATAATGCCTATCAAGATTTTGTTGTTGCAGCAGCAAATGTGTTGGAAGCCAAAGAAAATGCTGGTTCCATTAAAACAACAGCAACCGATACTGCTCTAGAAAACTTTAAGCAGAAGTGGGAATTGTTTAGAGTAGCATGTGATCAAGCTGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGATCCGAGTGTCTGGTGGATGAGGCAACAAGGCCTGTAGCAGGAAAACCTGGACAAGCTACCATGACTGGTCTTCCTCCCATCAGTGCAGTTCGGTTGGAACAGATGAGTAAAGCAGTTCGATGGCTTGTGATTGAATTGCAGCATGGCTCTGGAGCTGGTTCTGCTAATTCAGCTCTTACCCACCCCTCAGCTCAGTTTGATGCCAGGTTTTCTGAAGATGCTGCTCAGTAG

Predicted protein sequences of Glyma09g34810

Limit To All Plant Sequences

>Glyma09g34810.1   sequence type=predicted peptide   gene model=Glyma09g34810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSIVDSLNNAYQDFVVAAANVLEAKENAGSIKTTATDTALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATRPVAGKPGQATMTGLPPISAVRLEQMSKAVRWLVIELQHGSGAGSANSALTHPSAQFDARFSEDAAQ*

>Glyma09g34810.2   sequence type=predicted peptide   gene model=Glyma09g34810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSIVDSLNNAYQDFVVAAANVLEAKENAGSIKTTATDTALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATRPVAGKPGQATMTGLPPISAVRLEQMSKAVRWLVIELQHGSGAGSANSALTHPSAQFDARFSEDAAQ*

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