SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G45400 | AT | Annotation by Michelle Graham. TAIR10: Replication factor-A protein 1-related | chr5:18398990-18401644 FORWARD LENGTH=853 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR23273 | Panther | REPLICATION FACTOR A 1, RFA1 | JGI | ISS | |
| PF00098 | PFAM | Zinc knuckle | JGI | ISS | |
| PF01336 | PFAM | OB-fold nucleic acid binding domain | JGI | ISS | |
| PF04057 | PFAM | Replication factor-A protein 1, N-terminal domain | JGI | ISS | |
| PF08646 | PFAM | Replication factor-A C terminal domain | JGI | ISS | |
| UniRef100_G7K6U6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Replication protein A 70 kDa DNA-binding subunit n=1 Tax=Medicago truncatula RepID=G7K6U6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L560 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L560_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g34670 not represented in the dataset |
Glyma09g34670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g213500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g34670.2 sequence type=CDS gene model=Glyma09g34670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGTGTCCCTGACGCAGAGTGCGATAATGGAGATGTGCAGTGCGAATTGCCCCGAGGGCTTGCAACCGGTGCTGCAGGTGATCGAGTTGAAGCTGGTGCAGTCGCAGCAAAACAGCAACGTCGAGAGGTACCGTTTGGTTCTCTCCGACGGTTCACATTACCAGCAAGGGATGCTCGCCACGCAGAAGAACGACTTGGTTCATGCTGGAAAGTTACAGAAAGGTTCCGTTGTTAGACTCACTCAGTTCATCTGCAACGTTGTCCAGAGCCGCAAGATTATTATCATCGTTGACCTAGATGTTGTACTGGACAAATGTGAGCTGATTGGAGAACCTGTCCCTGCACCAAAAGATGCACCTACAGAATCTGCAACTGGTCAATCAGGAGTCACATCTGGGAATCCACAACTTTTGAATAGCAGTTCACACACTGGTGGCATGCCTGCTAGACCAAATGTGGCTTCACCATCTCCAGATCATCCAAAAGTAAATCCTTCTGCCAGTGGTGTTTATTCAAGTAATGCCCCTCCTACTTATCCTAAAGTAGAGCATGGAGTTAGTAGATCAGCACCATTCAGTGGGTCTTCTGGTGGTCAGAACACAGGTTTCCGCAATCCCCAATTTGAGGCGTCAAGGCCCTTGCAAAACTCATATGCTCGTCCACCTCAGCAGCCTATGTACCGTCAGCCATCTCCAATGTACACTAACAGAGCGCCAATGGGAAGAAATGAAGCTGCCCCCAGGATAATTCCAATAGCAGCATTGAATCCATACCAGAGTATGTGGACTATTAAAGCCAGGGTAACATTTAAGGGAGAACTCAGGCACTATACCAATGCTCGAGGTGATGGCAAGGTGTTTTCTTTTGATCTTCTGGATTCTGATGGCGGAGAAATTCGGGCAACTTGCTTCAATGCTGTGGCTGATCAGTTCTACAATGTTATTGAAGCTGGTAAGGTATATCTAATTTCCAGGGGAAGCATAAAGCCAGCTCAGAAGAATTTTAATCACCTTCGCAATGATCAAGAGCTGACCCTTGATGTGGCATCAATTATACAGCCATGCCTTGATGATAATGACTCAATTCCATCACAGACATTTAATTATCGCCCCATTAGTGAAATTGAAAGTTTGGAAAACAACAGCATTGTGGATGTGATTGGTGTGGTGACTTCTATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAGTTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCAGGCCGAAGTGTTGAGTTAACTCTATGGGGAAATTTTTGCATTGTAGAAGGACAAAGGTTGCAAACTATTTGTGATGCTGGGGAATTTCCAGTTTTGGCTACAAAAGCTGTCAGAGTAAATGATTTCAATGGGAAGTCTGTCGGGACTATAGCCACTAGTCAGCTATATGTGGAGCCTGATTTTCCTGAGGCTTGTACACTGAAAAGATGGTTTGAAAATGAAGGGAAGAGTGTCCCAACTCTCTCTATTTCCAGAGAAATATCTAATCTGGGTAAGACTGATGTGCGGAAGACTATATCTCAAATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTCTTTGCAGCTGTTTCACACATTAAGGTTGATAACTTCTGTTACCCAGGGTGCCCTCTCAAGATAGGGGATAGACAATGTAACAAAAAGGTGACTAATAACGCAGATGGGACATGGCATTGTGAAAGATGTAATCAGTCTATTGACACATGTGACTTTAGGTACTTACTGTCAATGCAGATACAGGATCACACTGGCATAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATAATGGGTATACCTGCAAAAGATTTGTATTATATGAAGTATGAAGAGCAAGATGATGATAAGTTTTCTGAAATCTTCCACAAGGTTCTCTTCACCGAGTACATGTTCAAGTTAAGAATAAAAGAGGAATTCTACAGTGATGAACAACGTATTAAGTCAACGATAGTAAAAGCAGAAAAGGTAAACTTTGCTTCTAAATCTAGAGTTAATTTGGAGTTGATTTTTAACGAACTCAGGGCTGAGAAATCGAAAGGTATCACCATTCCCAACTCTGTAACCAATAATACTAGACTGGGGAGCGTTGAAACTGGACAAGTTACACCACCAGCTTATTATAAGAGCAATGCTAATACCAGTAGAGATTTTGGGATGCCGGCAAATCAAGTGGGTCAACAGCATGGAAACCAATATAGCAATATTTCTTCTGCAGGTGCTGCTCCTGGTTCATATACATCATGCACCAACTGTGGAGTCTCTGGTCATAGCTCTGCACTTTGCCCAAATATTAGAAATGTACCTGGACATTCTGCAGGAGGGGGCTTTGCCAACAGGGCATCTGCGGGATTAGGTGGTGGTGGTGGTGCTTCTGTCGAATGCTATAAATGTCATCAAAGTGGTCATTATGCAAGAGATTGTCCTGGTTTCAGTGCAGCACCTCCATCATCATATGGGAGCAATTCAGGTGGTGGTGGTTCTGGCGAATGCTTTAAATGCCATCAAACTGGCCACTGGGCAAGAGACTGTCCTGGTCTCAGTGCAGCACCTTCATCATATGGAAGCGCTAATGCAATGCAGGGAAGATATGGGGTTGCTCAAAAGCAACAATTTGGAGGATATTGA
>Glyma09g34670.2 sequence type=predicted peptide gene model=Glyma09g34670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVSLTQSAIMEMCSANCPEGLQPVLQVIELKLVQSQQNSNVERYRLVLSDGSHYQQGMLATQKNDLVHAGKLQKGSVVRLTQFICNVVQSRKIIIIVDLDVVLDKCELIGEPVPAPKDAPTESATGQSGVTSGNPQLLNSSSHTGGMPARPNVASPSPDHPKVNPSASGVYSSNAPPTYPKVEHGVSRSAPFSGSSGGQNTGFRNPQFEASRPLQNSYARPPQQPMYRQPSPMYTNRAPMGRNEAAPRIIPIAALNPYQSMWTIKARVTFKGELRHYTNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIEAGKVYLISRGSIKPAQKNFNHLRNDQELTLDVASIIQPCLDDNDSIPSQTFNYRPISEIESLENNSIVDVIGVVTSISPTASIMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTICDAGEFPVLATKAVRVNDFNGKSVGTIATSQLYVEPDFPEACTLKRWFENEGKSVPTLSISREISNLGKTDVRKTISQIKDEKLGTSEKPDWISVFAAVSHIKVDNFCYPGCPLKIGDRQCNKKVTNNADGTWHCERCNQSIDTCDFRYLLSMQIQDHTGITWVTAFQESGEEIMGIPAKDLYYMKYEEQDDDKFSEIFHKVLFTEYMFKLRIKEEFYSDEQRIKSTIVKAEKVNFASKSRVNLELIFNELRAEKSKGITIPNSVTNNTRLGSVETGQVTPPAYYKSNANTSRDFGMPANQVGQQHGNQYSNISSAGAAPGSYTSCTNCGVSGHSSALCPNIRNVPGHSAGGGFANRASAGLGGGGGASVECYKCHQSGHYARDCPGFSAAPPSSYGSNSGGGGSGECFKCHQTGHWARDCPGLSAAPSSYGSANAMQGRYGVAQKQQFGGY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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