SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19130 | AT | Annotation by Michelle Graham. TAIR10: Replication factor-A protein 1-related | chr4:10466618-10469092 REVERSE LENGTH=784 | SoyBase | E_val: 2.00E-26 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR23273 | Panther | REPLICATION FACTOR A 1, RFA1 | JGI | ISS | |
| PF04057 | PFAM | Replication factor-A protein 1, N-terminal domain | JGI | ISS | |
| UniRef100_G7K6U4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Replication protein A1-like protein n=2 Tax=Medicago truncatula RepID=G7K6U4_MEDTR | SoyBase | E_val: 2.00E-80 | ISS |
| UniRef100_I1L559 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L559_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g34660 not represented in the dataset |
Glyma09g34660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g213300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g34660.1 sequence type=CDS gene model=Glyma09g34660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGTGTCTCTGACACAGGGGGCGATAACGGAGATTTGCAGAGGCAATTGCTCCGAAAACTTGCAACCGGTGCTGCAGGTGATCGAGTTGAAGCAGGTGCAGTCGCAGCAAAACAGCACCGTCGAGAGGTACTGCGTGGTTCTTTCCGACGGGTCCTTTTACCAGCAAGGGATGCTCGCCACGCAGAAGAATGACTTGGTTCATTCGGGAAAGTTGCAGAAAGGTTCCGTTCTTAGACTCACTCAGTTCCTCTGCAATGTTGTCCAGAACCACAAGATTATTATCATCATTGACCTAGATGTTATACTGGACTATTGTGAGCTGATTGGACAACCTGTCTCAACACCAAAACACACACCTAAAGAACCAGGAGTCAACTTTGGGAATTCACAATCTTTAAATAGCAGTTCACATGCAGGTGGCATGAATGCTAGACCAAATGTATCTGGGTCATCTATCTATTATCCAAAAGCGAATCCTCCTGCTCGTAATGACCCTCCTGCTTATCCTAAAGCAAAGACTCTGACGCAGGGGGCGATAATGGAGATATGCAGTGGCAATGACCCCAAGAATTTGCAGCCGGTGCTGCAGGTTATCGAGTTTAAGCTGGTCCAGTCGCAGCAAAACAGCACCATTGAAAGGTACCGTGTGGTTCTCTCTGACGGTTCCTTTTACCAGCAAGGGATGCTCGCCACGCAGAAGAATGAGTTGATCTATTCTGGAAGGTTGCAGCAAGGCGCCATTATTAGACTCACACAGTTCATCTGCAATGTTGTTCAAAACCGCAAGATTATTATCATAGTTGACCTAGATGTTATATGTGAAAAATGTGAGCTGATTGGAGAACCTGTCGCAGCTCCAAAAGGTGCACCTGCAGAATCTGCCACTGGTCAATCTGGATTCACCTTTGGAAATTTGCAATATTTGGATAGGAGTTCACATTCAGGTGGTATGACTACTATACAAAATTTGGCTGGTCAATCTCTGGACTTGAAGCCAGTGCTGCAAGTTCTGGAGTTGGAGTTGGTGAACTCCCAACAACATAGCGCCTCCGTGAATTTCCATTTGGTTCTCTCCGATGGTTACCATTTCCAGCAAGCGATGCTCACGACGCAGAAGAATCAATTGGTTCGTTCTGGAAAGTTGCAAAAAGGTTCCATTGTTAGACTCACTCAGTTCGTCTGCAACGTTGTCCAGAGTTGCAAGATTATTATGGTTCTTGATCTAGATGTTGTGCTGGAGAAATGTGAGCTGTTAGGACAACCTGTTGCAGCACCTGCAGAATTTGCCACTGGTCAACCTTCTGGATTCACCTTTGGGAATTCACAATCTTTGAATAGCTGTTCACACGCAGGTGGTGTCAGTGGGCTGGCAAATGATTTTAGTGCCATGAACCTTGCCACCGGGCAAGTTACGCCTCCAGCTTATAATCCAATAAATAGCAGTAGTGATTTTGATTTTGGGATGCCAACAAACCAAGTGGGTCAACGGTATGAAAGCCAATATAACAATTTTGTTTCAGCAGGTGCTCCTGGTTCATATATGTCATGCACCAATTGTGGAGGCTCTGGCCATAGCTCTCTTCTTTGCCCAAATATTAGAAATCTACCTTTGGGATCAGGTGGTGGTGCTTCTGTCGAATGCTGTAAATGCCATCAATCTGATCACTGGGGGGAGAGATTGCCCTGA
>Glyma09g34660.1 sequence type=predicted peptide gene model=Glyma09g34660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVSLTQGAITEICRGNCSENLQPVLQVIELKQVQSQQNSTVERYCVVLSDGSFYQQGMLATQKNDLVHSGKLQKGSVLRLTQFLCNVVQNHKIIIIIDLDVILDYCELIGQPVSTPKHTPKEPGVNFGNSQSLNSSSHAGGMNARPNVSGSSIYYPKANPPARNDPPAYPKAKTLTQGAIMEICSGNDPKNLQPVLQVIEFKLVQSQQNSTIERYRVVLSDGSFYQQGMLATQKNELIYSGRLQQGAIIRLTQFICNVVQNRKIIIIVDLDVICEKCELIGEPVAAPKGAPAESATGQSGFTFGNLQYLDRSSHSGGMTTIQNLAGQSLDLKPVLQVLELELVNSQQHSASVNFHLVLSDGYHFQQAMLTTQKNQLVRSGKLQKGSIVRLTQFVCNVVQSCKIIMVLDLDVVLEKCELLGQPVAAPAEFATGQPSGFTFGNSQSLNSCSHAGGVSGLANDFSAMNLATGQVTPPAYNPINSSSDFDFGMPTNQVGQRYESQYNNFVSAGAPGSYMSCTNCGGSGHSSLLCPNIRNLPLGSGGGASVECCKCHQSDHWGERLP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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