SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G45410 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits to 124 proteins in 34 species: Archae - 2; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18402071-18403282 REVERSE LENGTH | SoyBase | E_val: 3.00E-120 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1L558 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L558_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FHJ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5G45410 protein n=2 Tax=Arabidopsis thaliana RepID=Q9FHJ5_ARATH | SoyBase | E_val: 2.00E-117 | ISS |
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Glyma09g34650 not represented in the dataset |
Glyma09g34650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g213200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g34650.4 sequence type=transcript gene model=Glyma09g34650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAAAGGCGTGTCATTTACCTTTTAAAACCCTTCTCTTCCCTTTCTCACGTGTCTGTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATGAACAGGGATGGATCTGAGTGTCCCTTTGATGTGAAAGACATCCAACGGTGTCCGTTTTTAAGAAACATCAATGAACCTACAAACTTCTCTTTCTCCTCAACTAAAATCTCCATTCCTGTTCATGGATCCAAGGGTCCTATATTTGAAGATGGTCCTAGTTTTGGCATGGCATTTAAGCTATTTCATGGGAAGGATGGAGTCATTCCCCTATCTGAGAAATCTGACTTTCACAATGGCAGCACAGAAGCAGATTCTCTGCCTGTTTTCAACCCTTTGGCAGGAAGAGCTGCCTCCATAAGTCTGTCTGGACCAGGTGGCCCATTTAGTTTTTGGAATTTTTCTGAGAAATGGAAGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAGGAACTTGCCCAATTGCCAAGTCTTATAGAGCTGTAAGCAATGTTCTACCCCTTGTTGCAACAGCTTTTCGGCCACCGAGTGGAGTGAAGCTTAGATGTCCACATGCAATTGTTGCTGCAAGGGCTGCCCTTGCCCGTACAACCTTTGTGAAAAACATGCGCCCTCAGCCTCTTCCTGCAAAAATGCTTGTTATTGCAGCGTTAGGCATGGCGGTTAATGTGCCCTTTGGCATGTGGAAGGAGCATACCAAGAAATTTTCATTATCTTGGTTTGTAGCCGTGCATGCTGCTGTTCCCTTTATAGCCATGCTTCGGAAGTCAGTGGTGATGCCTAAATCAGCAATGGCACTGACCATTGCAGCTTCTATACTTGGACAAGTTATTGGCTCAAGAGCTGAGCGAATCCGGCTGAAAACAATAGCTGTTGAGATGGGAAAAGTGAAAACAGAGACAGTATGCAGCATGGAAAGCTATAATAGTCCCATGCAACTTGGTGATATTAGGGCCAATCACTGTGGTGCTGAAGGAATGGTCCTCAAGTCGTCACTTCCTGTGAAGGATACTGGTTCAACTTCAACTGCTGGCGTGTGTTATTGATCTATAAAGATTGGAAAGAAATCCATTCAGGTTCTATTTGAACATATTGATGAACTGGAATTGTAATAAAATTGATTAATATAAATAAGATCCTTATGAGCTATGTATAACTTGAACAGAAATTAAGACATGCTGTTACTATGCATGCAGAAATGTATATGGAGAATTGATCGCTTAATTCTGATAAAAGTTGAGTTCGTCTTAAATTATTCATATTTTCTGAGATTTCGATCAAGT
>Glyma09g34650.3 sequence type=CDS gene model=Glyma09g34650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTTCTTTTTTAAGGGAATGAACAGGGATGGATCTGAGTGTCCCTTTGATGTGAAAGACATCCAACGGTGTCCGTTTTTAAGAAACATCAATGAACCTACAAACTTCTCTTTCTCCTCAACTAAAATCTCCATTCCTGTTCATGGATCCAAGGGTCCTATATTTGAAGATGGTCCTAGTTTTGGCATGGCATTTAAGCTATTTCATGGGAAGGATGGAGTCATTCCCCTATCTGAGAAATCTGACTTTCACAATGGCAGCACAGAAGCAGATTCTCTGCCTGTTTTCAACCCTTTGGCAGGAAGAGCTGCCTCCATAAGTCTGTCTGGACCAGGTGGCCCATTTAGTTTTTGGAATTTTTCTGAGAAATGGAAGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAGGAACTTGCCCAATTGCCAAGTCTTATAGAGCTGTAAGCAATGTTCTACCCCTTGTTGCAACAGCTTTTCGGCCACCGAGTGGAGTGAAGCTTAGATGTCCACATGCAATTGTTGCTGCAAGGGCTGCCCTTGCCCGTACAACCTTTGTGAAAAACATGCGCCCTCAGCCTCTTCCTGCAAAAATGCTTGTTATTGCAGCGTTAGGCATGGCGGTTAATGTGCCCTTTGGCATGTGGAAGGAGCATACCAAGAAATTTTCATTATCTTGGTTTGTAGCCGTGCATGCTGCTGTTCCCTTTATAGCCATGCTTCGGAAGTCAGTGGTGATGCCTAAATCAGCAATGGCACTGACCATTGCAGCTTCTATACTTGGACAAGTTATTGGCTCAAGAGCTGAGCGAATCCGGCTGAAAACAATAGCTGTTGAGATGGGAAAAGTGAAAACAGAGACAGTATGCAGCATGGAAAGCTATAATAGTCCCATGCAACTTGGTGATATTAGGGCCAATCACTGTGGTGCTGAAGGAATGGTCCTCAAGTCGTCACTTCCTGTGAAGGATACTGGTTCAACTTCAACTGCTGGCGTGTGTTATTGA >Glyma09g34650.4 sequence type=CDS gene model=Glyma09g34650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTTCTTTTTTAAGGGAATGAACAGGGATGGATCTGAGTGTCCCTTTGATGTGAAAGACATCCAACGGTGTCCGTTTTTAAGAAACATCAATGAACCTACAAACTTCTCTTTCTCCTCAACTAAAATCTCCATTCCTGTTCATGGATCCAAGGGTCCTATATTTGAAGATGGTCCTAGTTTTGGCATGGCATTTAAGCTATTTCATGGGAAGGATGGAGTCATTCCCCTATCTGAGAAATCTGACTTTCACAATGGCAGCACAGAAGCAGATTCTCTGCCTGTTTTCAACCCTTTGGCAGGAAGAGCTGCCTCCATAAGTCTGTCTGGACCAGGTGGCCCATTTAGTTTTTGGAATTTTTCTGAGAAATGGAAGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAGGAACTTGCCCAATTGCCAAGTCTTATAGAGCTGTAAGCAATGTTCTACCCCTTGTTGCAACAGCTTTTCGGCCACCGAGTGGAGTGAAGCTTAGATGTCCACATGCAATTGTTGCTGCAAGGGCTGCCCTTGCCCGTACAACCTTTGTGAAAAACATGCGCCCTCAGCCTCTTCCTGCAAAAATGCTTGTTATTGCAGCGTTAGGCATGGCGGTTAATGTGCCCTTTGGCATGTGGAAGGAGCATACCAAGAAATTTTCATTATCTTGGTTTGTAGCCGTGCATGCTGCTGTTCCCTTTATAGCCATGCTTCGGAAGTCAGTGGTGATGCCTAAATCAGCAATGGCACTGACCATTGCAGCTTCTATACTTGGACAAGTTATTGGCTCAAGAGCTGAGCGAATCCGGCTGAAAACAATAGCTGTTGAGATGGGAAAAGTGAAAACAGAGACAGTATGCAGCATGGAAAGCTATAATAGTCCCATGCAACTTGGTGATATTAGGGCCAATCACTGTGGTGCTGAAGGAATGGTCCTCAAGTCGTCACTTCCTGTGAAGGATACTGGTTCAACTTCAACTGCTGGCGTGTGTTATTGA
>Glyma09g34650.3 sequence type=predicted peptide gene model=Glyma09g34650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDFFFKGMNRDGSECPFDVKDIQRCPFLRNINEPTNFSFSSTKISIPVHGSKGPIFEDGPSFGMAFKLFHGKDGVIPLSEKSDFHNGSTEADSLPVFNPLAGRAASISLSGPGGPFSFWNFSEKWKKQKNSESSNKKEYSPQNGDVSKHEALGNEWLAKGTCPIAKSYRAVSNVLPLVATAFRPPSGVKLRCPHAIVAARAALARTTFVKNMRPQPLPAKMLVIAALGMAVNVPFGMWKEHTKKFSLSWFVAVHAAVPFIAMLRKSVVMPKSAMALTIAASILGQVIGSRAERIRLKTIAVEMGKVKTETVCSMESYNSPMQLGDIRANHCGAEGMVLKSSLPVKDTGSTSTAGVCY* >Glyma09g34650.4 sequence type=predicted peptide gene model=Glyma09g34650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDFFFKGMNRDGSECPFDVKDIQRCPFLRNINEPTNFSFSSTKISIPVHGSKGPIFEDGPSFGMAFKLFHGKDGVIPLSEKSDFHNGSTEADSLPVFNPLAGRAASISLSGPGGPFSFWNFSEKWKKQKNSESSNKKEYSPQNGDVSKHEALGNEWLAKGTCPIAKSYRAVSNVLPLVATAFRPPSGVKLRCPHAIVAARAALARTTFVKNMRPQPLPAKMLVIAALGMAVNVPFGMWKEHTKKFSLSWFVAVHAAVPFIAMLRKSVVMPKSAMALTIAASILGQVIGSRAERIRLKTIAVEMGKVKTETVCSMESYNSPMQLGDIRANHCGAEGMVLKSSLPVKDTGSTSTAGVCY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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