Report for Sequence Feature Glyma09g34565
Feature Type: gene_model
Chromosome: Gm09
Start: 40925699
stop: 40929850
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g34565
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G37740 AT
Annotation by Michelle Graham. TAIR10: growth-regulating factor 2 | chr4:17725533-17727609 REVERSE LENGTH=535
SoyBase E_val: 5.00E-39 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0009845 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed germination
SoyBase N/A ISS
GO:0009965 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis
SoyBase N/A ISS
GO:0010162 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed dormancy process
SoyBase N/A ISS
GO:0048366 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016818 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
SoyBase N/A ISS
PF08879 PFAM
WRC
JGI ISS
PF08880 PFAM
QLQ
JGI ISS
UniRef100_D9ZJ00 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GRF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ00_MALDO
SoyBase E_val: 8.00E-48 ISS
UniRef100_UPI0002337FE1 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337FE1 related cluster n=1 Tax=unknown RepID=UPI0002337FE1
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g34565
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g34565
Paralog Evidence Comments
Glyma01g35145 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g34565 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g212500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g34565
Coding sequences of Glyma09g34565
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g34565.1 sequence type=CDS gene model=Glyma09g34565 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCGTTCCTCCGCCGTCTACGGCGGCGATGTGGACGCCGTTCACGGCAGCGCAGTGGCACGAGCTGGAGCACCAGGCCCTCATCTTCAAGTACCTCAAGGCGGGTCTCTCGGTTCCCCCTGACCTCCTTCTCCCCATTCGCAAGAGCCTCCAATTGATATCGTCTCACCCATCGATGGGGTATTATGGGAAGAAGATAGACCCTGAACCGGGTCGGTGCAGGAGAACCGATGGGAAAAAGTGGAGGTGTTCGAGGGATGCACACCCTGACTCCAAGTACTGCGACCGCCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCATCTCAAACTCACTCTTCTTCTTCTGCTTCTGCTGCTTCTTCAAATTCAAACCCTGTTGCTGCTGGTGGTGGTGGTGGTTCTGTTGCTAATGTTTCTGCAACTGCTGCAAAAAACCTTCACACACTTCCCTTGCACATCAATGGCGCAAGGGAAGGTTTCACTTTCACCCTTGGGAACAACACCAGCACCAACACCAACACCAACACCAACACCCTCCCTCACCTTCACATGAACCCCCTCACTCTTTCAGCTGACAATACCAAGAAAACTTACAGGTTTGGACTGAACTCAGAAGCAGATGAGCACAACGTCTTACAGAAAGATCTGGGAAGTGTGAGGTATCAAGGTTATGACTTTACCTCAGATGCCATGTGGTCTCAAATGTCTCACATTCCATCAAATACTGTTTCGGAATCGAGAATCGGTTCTACTATGCTGGGCAACTGCTTCCAGCATCAAACAATGCGAGATGCTGAGCTGTTGAATCTGGAAACGGCGAGGACCAAAGACCTTGTCTTTAGTGGCCAGCTAAGTTCTGCAGGGGGTATGAAACAGGAATATCAGTCTCCCCAGTCTCTCTTCAGTGACTGGGACTGGAAGAAGGATTTAAGTTCCTCTGCCCTTGAGTATAGGCCCAACAAGGATTTTAACTGCAACCCAGATGTCAATGTTGATTAA
Predicted protein sequences of Glyma09g34565
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g34565.1 sequence type=predicted peptide gene model=Glyma09g34565 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSVPPPSTAAMWTPFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRKSLQLISSHPSMGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESSQTHSSSSASAASSNSNPVAAGGGGGSVANVSATAAKNLHTLPLHINGAREGFTFTLGNNTSTNTNTNTNTLPHLHMNPLTLSADNTKKTYRFGLNSEADEHNVLQKDLGSVRYQGYDFTSDAMWSQMSHIPSNTVSESRIGSTMLGNCFQHQTMRDAELLNLETARTKDLVFSGQLSSAGGMKQEYQSPQSLFSDWDWKKDLSSSALEYRPNKDFNCNPDVNVD*