SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19045 | AT | Annotation by Michelle Graham. TAIR10: Mob1/phocein family protein | chr4:10438213-10439788 REVERSE LENGTH=215 | SoyBase | E_val: 6.00E-149 | ISS |
| KOG0440 | KOG | Cell cycle-associated protein Mob1-1 | JGI | ISS | |
| PTHR22599 | Panther | MPS ONE BINDER KINASE ACTIVATOR-LIKE (MOB) | JGI | ISS | |
| PTHR22599:SF8 | Panther | MPS ONE BINDER KINASE ACTIVATOR-LIKE 1 (MOB1 HOMOLOG 1) (MOB1) | JGI | ISS | |
| PF03637 | PFAM | Mob1/phocein family | JGI | ISS | |
| UniRef100_B7FN82 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mps one binder kinase activator-like 1A n=1 Tax=Medicago truncatula RepID=B7FN82_MEDTR | SoyBase | E_val: 2.00E-154 | ISS |
| UniRef100_I1J825 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J825_SOYBN | SoyBase | E_val: 3.00E-158 | ISS |
|
Glyma09g34550 not represented in the dataset |
Glyma09g34550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g35130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g212400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g34550.1 sequence type=CDS gene model=Glyma09g34550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCCTCTTCGGTATAGGCAGAAACCAGAGAACATTCCGCCCGAAAAAAAGTACTCCTTCTGGAAGTAAGGGAGCTCAACTTAGAAAACATATTGATGCCACGTTGGGTAGTGGAAATCTGAGGGAAGCAGTAAAGCTACCTCCTGGGGAGGATTTAAATGAGTGGCTAGCTGTCAACACTGTTGATTTCTTCAACCAGGTGAATCTGCTTTATGGTACCCTTACAGAGTTCTGTACTCCTGAGAATTGTCGGACGATGTCCGCAGGACCCAAGTATGAATATAGATGGGCAGATGGTGTACAAATTAAGAAACCTATTGAGGTTTCTGCTCCAAAATATGTAGAATACCTAATGGACTGGATTGAAGCACAGCTTGATGATGAATCCATATTCCCACAGAAGCTTGGTTCACCATTTCCTCCCAACTTTAAGGAAGTTGTGAAGACAATATTCAAGCGGTTGTTCCGTGTATATGCTCACATATACCATTCTCACTTTCAGAAAATTGTGAGCCTCAAAGAAGAGGCGCACTTAAACACTTGCTTCAAGCATTTTATACTCTTCACCTGTGAGTTCGGGCTGATTGACAAAAAGGAGCTTGCGCCCCTTCAAGAGCTTATAGAAACCATTATCCCATATTAA
>Glyma09g34550.1 sequence type=predicted peptide gene model=Glyma09g34550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLFGIGRNQRTFRPKKSTPSGSKGAQLRKHIDATLGSGNLREAVKLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTPENCRTMSAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIEAQLDDESIFPQKLGSPFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELAPLQELIETIIPY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
