Glyma09g34310 - SoyBase

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Report for Sequence Feature Glyma09g34310

Feature Type:	gene_model
Chromosome:	Gm09
Start:	40727829
stop:	40733492
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g34310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45620	AT	Annotation by Michelle Graham. TAIR10: Proteasome component (PCI) domain protein \| chr5:18501590-18503868 FORWARD LENGTH=386	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008541	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2908	KOG	26S proteasome regulatory complex, subunit RPN9/PSMD13	JGI		ISS
PTHR10539	Panther	26S PROTEASOME SUBUNIT-RELATED	JGI		ISS
PF01399	PFAM	PCI domain	JGI		ISS
UniRef100_C6TJL2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJL2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7K9K1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=G7K9K1_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g34310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g34310 not represented in the dataset	Glyma09g34310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g34310

Paralog	Evidence	Comments
Glyma01g01460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g34310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g210000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g34310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g34310

Limit To All Plant Sequences

>Glyma09g34310.2   sequence type=transcript   gene model=Glyma09g34310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAGAGGAAGCAAACAAAACCCAAAAAACTATAAGAAAAAACAAATAAAAAGAAGGACGATTATTCCGAAATTAATTCAAAAAAGAAAAAAGAAAAAAGGAGTTAGGGTATAAAAAACAGAAGAAAGAAGGCACACCAGTGGTATTGCGTGTTGGTGTGAATCAAGAACCGCTCTGCTATGGCTGCTCTGCAATACTTGGAATCGCTGCGCAATTCGCACCCTGAGCTCTCCGATTGGTACAATTCGCTGGCGGATCTGTACCAGAAGAAGCTCTGGCACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGGCTGTTTCTCGGCAGTATTCTGAAAAAGAAGCTGCTGTTGGTTATCTTGGAGGGGTCATTCAGAAACTTCAAGACACTAGAGAGCAGCGCATAGAAGAACCTATTCTTTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGATCAAAAGGAATGCAAGAAACTTCTAGAAGATGGGAAGAGTACACTCGACAGCATGACAGATATTGATCCATCTGTATATGCTAGCTATTACTGGGTATCATCTCAGTTTCATAAGACATGCCAAGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATCTGGTACGATATCAAGAATTATGTCGGGTGCATAATGCTGCTTTAAGAGCCCAACCAGCACTAGTTCAAAATGAGCAAAAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTTTCCTGGGTGCAGCCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTGGACAGTTGGACTGGAAAAGTTCACACTGCATTGCTGTCCATTGAGGCTGAAACACCTGATCTAATTGGATCGTGATTTTTCTTTAATTTGGTTTCTGCTCTTTGTAACAATTTCTTAAGTTGAAGGGAATACATCCTAAGGCGACAAAAGATGAAGAGACTTCCAAGTGACATGGGCAATGAATGTAGCTAACTTTATATGCTTCATTTGCTTTTTGAATGATTGCTGGAAAGAGCAGTCCCTTGTACTTGGCTTAGAAATTGTTAGTTCTATGCCTGCATACCTAGAGACATGGTAACTTGGTTGGAAACAGGCTGTTTTTACGCTTTAGAGTGATGACAAACTATGTATCTGGAATTTTCTTAGATACGGCCATTTTTATTCACTTCAGAAATTTCTTTTTTATTGAATTGTGCCAAGCATTCACCTTAGTTTGTCTAATTTCTCATGTACTTCAATATGGGTGCTACTTAACTTGCCATGAGATGAATCTTGTCATACCAATTCTGTTAG

Coding sequences of Glyma09g34310

Limit To All Plant Sequences

>Glyma09g34310.1   sequence type=CDS   gene model=Glyma09g34310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCTGCAATACTTGGAATCGCTGCGCAATTCGCACCCTGAGCTCTCCGATTGGTACAATTCGCTGGCGGATCTGTACCAGAAGAAGCTCTGGCACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGGCTGGTGATGCTTTAATACAATTATATCACAATTTCATCACAGACTTTGAGACGAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTCGGCAGTATTCTGAAAAAGAAGCTGCTGTTGGTTATCTTGGAGGGGTCATTCAGAAACTTCAAGACACTAGAGAGCAGCGCATAGAAGAACCTATTCTTTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGATCAAAAGGAATGCAAGAAACTTCTAGAAGATGGGAAGAGTACACTCGACAGCATGACAGATATTGATCCATCTGTATATGCTAGCTATTACTGGGTATCATCTCAGTTTCATAAGACATGCCAAGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATCTGGTACGATATCAAGAATTATGTCGGGTGCATAATGCTGCTTTAAGAGCCCAACCAGCACTAGTTCAAAATGAGCAAAAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTTTCCTGGGTGCAGCCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTGGACAGTTGGACTGGAAAAGTTCACACTGCATTGCTGTCCATTGAGGCTGAAACACCTGATCTAATTGGATCGTGA

>Glyma09g34310.2   sequence type=CDS   gene model=Glyma09g34310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCTGCAATACTTGGAATCGCTGCGCAATTCGCACCCTGAGCTCTCCGATTGGTACAATTCGCTGGCGGATCTGTACCAGAAGAAGCTCTGGCACCAGCTCACTCTCAAGCTCGAGCAGTTTGTGGCTCTCGCCGTCTTCCAGGCTGTTTCTCGGCAGTATTCTGAAAAAGAAGCTGCTGTTGGTTATCTTGGAGGGGTCATTCAGAAACTTCAAGACACTAGAGAGCAGCGCATAGAAGAACCTATTCTTTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGATCAAAAGGAATGCAAGAAACTTCTAGAAGATGGGAAGAGTACACTCGACAGCATGACAGATATTGATCCATCTGTATATGCTAGCTATTACTGGGTATCATCTCAGTTTCATAAGACATGCCAAGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTCTATTTGGCATACACATCAGTGGAATCTCTCTCAGATTCATTCAAGCTGGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATCTGGTACGATATCAAGAATTATGTCGGGTGCATAATGCTGCTTTAAGAGCCCAACCAGCACTAGTTCAAAATGAGCAAAAGTTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAGATTATATTCAGTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGCACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAAAGCCTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTTTCCTGGGTGCAGCCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTGGACAGTTGGACTGGAAAAGTTCACACTGCATTGCTGTCCATTGAGGCTGAAACACCTGATCTAATTGGATCGTGA

Predicted protein sequences of Glyma09g34310

Limit To All Plant Sequences

>Glyma09g34310.1   sequence type=predicted peptide   gene model=Glyma09g34310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALQYLESLRNSHPELSDWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAVGYLGGVIQKLQDTREQRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFHKTCQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS*

>Glyma09g34310.2   sequence type=predicted peptide   gene model=Glyma09g34310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALQYLESLRNSHPELSDWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAVSRQYSEKEAAVGYLGGVIQKLQDTREQRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFHKTCQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS*

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