SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19003 | AT | Annotation by Michelle Graham. TAIR10: E2F/DP family winged-helix DNA-binding domain | chr4:10407571-10408582 REVERSE LENGTH=179 | SoyBase | E_val: 1.00E-109 | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0000814 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ESCRT II complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG4068 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13149 | Panther | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 | JGI | ISS | |
| PF05871 | PFAM | ESCRT-II complex subunit | JGI | ISS | |
| UniRef100_G7K9K5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting-associated protein n=1 Tax=Medicago truncatula RepID=G7K9K5_MEDTR | SoyBase | E_val: 6.00E-118 | ISS |
| UniRef100_I1L524 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L524_SOYBN | SoyBase | E_val: 1.00E-127 | ISS |
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Glyma09g34270 not represented in the dataset |
Glyma09g34270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g01491 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g209600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g34270.4 sequence type=transcript gene model=Glyma09g34270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGCAATCGAAACGTGCACATTGATATAAAACGCTGTCGTTTCAATTTGCTTTCTCATCGGTGGTCTTCTTCGTCCGTCGTGATTGTGTTAGGGTTCGCAAAATTGCAGCTTCCCTTCACAGTTTTCGTCCCGAAAAATCCATAGTATCGCGTGACACGCATTGAAGCACTTGAAAGATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAATTGTTTTGTGTATTAATCTATTGAATCTTGGGGGATTTTACATATGTAACCAACAGGGGAATCTTTTGCTATCTACTTGATGAGTTTGTTGATGTGCAAGGTGTGTAAGAACCAGCTGTAGTAAATTGCTATCAATTTTCATTTCGGGAGCTTTGCTGTGTTAAGTGCTTAGCTTTGTGGCTATTGTAGTTAAATTAGTGAAACTACGCTCCCTGTGAAATCATGAAATTCGTAAATAGGAGGGGTTCCAACGTGCCAAAAGCTATCCTAGTATCAAACATTGATATTATTAAAAATAATGAAGTTGCTTCTGTGTCAATGGTTATATGTCTGCGTCAGTCAGTCAGTTACTCATACCACTGCGAAGTTGTTCTCATATATTAATAATACAATTATTTCAAAT >Glyma09g34270.5 sequence type=transcript gene model=Glyma09g34270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTGTGTTAGGGTTCGCAAAATTGCAGCTTCCCTTCACAGTTTTCGTCCCGAAAAATCCATAGTATCGCGTGACACGGCTGTTAATCTCTGTGCATAGCATTGAAGCACTTGAAAGATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAATTGTTTTGTGTATTAATCTATTGAATCTTGGGGGATTTTACATATGTAACCAACAGGGGAATCTTTTGCTATCTACTTGATGAGTTTGTTGATGTGCAAGGTGTGTAAGAACCAGCTGTAGTAAATTGCTATCAATTTTCATTTCGGGAGCTTTGCTGTGTTAAGTGCTTAGCTTTGTGGCTATTGTAGTTAAATTAGTGAAACTACGCTCCCTGTGAAATCATGAAATTCGTAAATAGGAGGGGTTCCAACGTGCCAAAAGCTATCCTAGTATCAAACATTGATATTATTAAAAATAATGAAGTTGCTTCTGTGTC
>Glyma09g34270.2 sequence type=CDS gene model=Glyma09g34270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAA >Glyma09g34270.4 sequence type=CDS gene model=Glyma09g34270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAA >Glyma09g34270.5 sequence type=CDS gene model=Glyma09g34270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAAATTGGGAGAGTTTAAATTACCACCTTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTCAGAGACACAAGAGAGAAGCAGATACAGCTATGGAAAGATCTTATTTTAGATTTTTGTAAAACACAGAAGATATTTATAATTGGGCTTGAAGAAGAATTTCCACTATTTACAAATCATGGAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCTTTCCTTTCAGCATTAGTGTCTGAAGGGCGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGATATTTTAATACAGTTTGCAAAAGATAATGGGCTGGAAGATGGTGTTGTCACAATAGAAGAAATACGATCAGGCACTGAATCTCAAGGAACAGATCTTCATGGAATAGATCGAACTATTTTGAATCGAGCACTGAAACTATTAGAACAGAAGGGAAAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTTTATAA
>Glyma09g34270.2 sequence type=predicted peptide gene model=Glyma09g34270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQKLGEFKLPPFFNYPPYFTLQPVRDTREKQIQLWKDLILDFCKTQKIFIIGLEEEFPLFTNHGIERSLTHEAREAFLSALVSEGRAEWMDKGHRKCLILWHRIQDWADILIQFAKDNGLEDGVVTIEEIRSGTESQGTDLHGIDRTILNRALKLLEQKGKLVVFKGTSTDDEGVKFSL* >Glyma09g34270.4 sequence type=predicted peptide gene model=Glyma09g34270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQKLGEFKLPPFFNYPPYFTLQPVRDTREKQIQLWKDLILDFCKTQKIFIIGLEEEFPLFTNHGIERSLTHEAREAFLSALVSEGRAEWMDKGHRKCLILWHRIQDWADILIQFAKDNGLEDGVVTIEEIRSGTESQGTDLHGIDRTILNRALKLLEQKGKLVVFKGTSTDDEGVKFSL* >Glyma09g34270.5 sequence type=predicted peptide gene model=Glyma09g34270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQKLGEFKLPPFFNYPPYFTLQPVRDTREKQIQLWKDLILDFCKTQKIFIIGLEEEFPLFTNHGIERSLTHEAREAFLSALVSEGRAEWMDKGHRKCLILWHRIQDWADILIQFAKDNGLEDGVVTIEEIRSGTESQGTDLHGIDRTILNRALKLLEQKGKLVVFKGTSTDDEGVKFSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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