Glyma09g34100 - SoyBase

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Report for Sequence Feature Glyma09g34100

Feature Type:	gene_model
Chromosome:	Gm09
Start:	40532805
stop:	40535046
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g34100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32210	AT	Annotation by Michelle Graham. TAIR10: Defender against death (DAD family) protein \| chr1:11606047-11607652 REVERSE LENGTH=115	SoyBase	E_val: 2.00E-64	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1746	KOG	Defender against cell death protein/oligosaccharyltransferase, epsilon subunit	JGI		ISS
PTHR10705	Panther	DEFENDER AGAINST CELL DEATH	JGI		ISS
PF02109	PFAM	DAD family	JGI		ISS
UniRef100_I1L507	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Magnoliophyta RepID=I1L507_SOYBN	SoyBase	E_val: 6.00E-124	ISS
UniRef100_Q39080	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 n=1 Tax=Arabidopsis thaliana RepID=DAD1_ARATH	SoyBase	E_val: 7.00E-62	ISS

Expression Patterns of Glyma09g34100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g34100 not represented in the dataset	Glyma09g34100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g34100

Paralog	Evidence	Comments
Glyma01g01820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g34100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g207800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g34100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g34100

Limit To All Plant Sequences

>Glyma09g34100.3   sequence type=transcript   gene model=Glyma09g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTAACCAGCCCTCGTTCTTTTGCTAAAAAATGATTCGGCCTAAAGCCCAAGAGAGATTGAAATGTACACCTGACCCTGAGAAAGTGGCGAAGAGAATGGGTGGGTCTAGCAGTAGCAGTAGCAGTAGCAGCAAGGACGCCCAAGACCTTTTCCGCGCTCTTTGGTCTGCTTATGCTTCAACCCCAACAAATCTCAAGATCATTGACCTCTACGTAATCTATGCCGTCTTCACCGCTCTCATCCAGGTTGTTTACATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAAATTGGTTCGTGTGGCTGTTGTTGTTTTCGATTGAACCCTTGAATAATAAAAATTAGTAGTATACCTAGACTTTTTGTAATAGTATTTATAGACAGTAACTGGCATCCAACTAATTGCTTTAGTTTTATGTTGATTCCCCCTCCCCCCGCCACTTTTGGTTCTCTGTTTTGAAAGAAGAGATTTTGCCATCTTTTGAAGTTTAAACAACTTTTGAATGGTGAAGAATTACAGAAGGTATTATTTTTCACATGGATATCTAAATCTGAGTACTACTCCAAAATACTCAGAAAGTGGCAAGTTATAGTTTTCTTTTGAAAAGAAGCAATTAATGGTTGCAGAACACTGCCTGTAGTATATTGCAGCTGATACCATGGTGATGCCTCCAAAAGAGCAAAGGAAAAGCTGTTTGTATGCTGCAGCATATGGCATATGATATATATACCTGATGAATCCATCTATGACATTGCTTTTATTGACCAAAAAGATTCGAGAACTCAATTTGCTTTTATTCAACAAAATGCATGTAAATATTTCTATCCTTCATCAATTCATCTTCCCCCATCCCACCCCACCCC

>Glyma09g34100.4   sequence type=transcript   gene model=Glyma09g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATTTGCAGTCATAAAACACTCTATTTTGACCTTTTTTTAGAGGAGGATTGCAATAAGCAAGCTTGTCATAGACGTTCTAGGCTTCTAGCTTAACTATATAGTCATAGAGTGTGGATCCAGGAAGTTCCTCCAGAAATTTGTAATCTTGGTGCTTTATTTGATATTCGTCTAGTTTCTAGTTTAACGATTTCCTCCTTCAACATTAGAAGAAAAACGTACTGGTGAAATCATTTATTTTTTTTGTGAGGGCTCAAGGTTGTTTAGTGGGTTTATGTTAAAGTTACATTTGTTGAAACTCGTGTTCTTATTTTTTTTTGTCTGTGAATAGGTTGTTTACATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAAATTGGTTCGTGTGGCTGTTGTTGTTTTCGATTGAACCCTTGAATAATAAAAATTAGTAGTATACCTAGACTTTTTGTAATAGTATTTATAGACAGTAACTGGCATCCAACTAATTGCTTTAGTTTTATGTTGATTCCCCCTCCCCCCGCCACTTTTGGTTCTCTGTTTTGAAAGAAGAGATTTTGCCATCTTTTGAAGTTTAAACAACTTTTGAATGGTGAAGAATTACAGAAGGTATTATTTTTCACATGGATATCTAAATCTGAG

Coding sequences of Glyma09g34100

Limit To All Plant Sequences

>Glyma09g34100.1   sequence type=CDS   gene model=Glyma09g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCGGCCTAAAGCCCAAGAGAGATTGAAATGTACACCTGACCCTGAGAAAGTGGCGAAGAGAATGGGTGGGTCTAGCAGTAGCAGTAGCAGTAGCAGCAAGGACGCCCAAGACCTTTTCCGCGCTCTTTGGTCTGCTTATGCTTCAACCCCAACAAATCTCAAGATCATTGACCTCTACGTAATCTATGCCGTCTTCACCGCTCTCATCCAGGTTGTTTACATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGCGCAGCATGGGACTTATAAACCTGCTACGTACATAGGCATAAATCTTGTTCTTGTCTTTCTGATCATTGTTATCCTCCTTCATTTTGGACCAGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAA

>Glyma09g34100.3   sequence type=CDS   gene model=Glyma09g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCGGCCTAAAGCCCAAGAGAGATTGAAATGTACACCTGACCCTGAGAAAGTGGCGAAGAGAATGGGTGGGTCTAGCAGTAGCAGTAGCAGTAGCAGCAAGGACGCCCAAGACCTTTTCCGCGCTCTTTGGTCTGCTTATGCTTCAACCCCAACAAATCTCAAGATCATTGACCTCTACGTAATCTATGCCGTCTTCACCGCTCTCATCCAGGTTGTTTACATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAA

>Glyma09g34100.4   sequence type=CDS   gene model=Glyma09g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGGTGGGATCATTTCCATTTAACTCCTTCCTATCAGGAGTACTTTCTTGTGTAGGAACTGCTGTTCTTGCTGTCTGTCTCAGGATCCAAGTGAATAAAGATAACAAGGAATTCAAGGATCTTGCACCTGAGCGTGCTTTTGCGGATTTTGTTCTCTGTAATTTGGTGCTTCATTTGGTGATCATGAACTTCCTTGGTTAA

Predicted protein sequences of Glyma09g34100

Limit To All Plant Sequences

>Glyma09g34100.1   sequence type=predicted peptide   gene model=Glyma09g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRPKAQERLKCTPDPEKVAKRMGGSSSSSSSSSKDAQDLFRALWSAYASTPTNLKIIDLYVIYAVFTALIQVVYMALVGSFPFNSFLSGVLSCVGTAVLAAQHGTYKPATYIGINLVLVFLIIVILLHFGPVCLRIQVNKDNKEFKDLAPERAFADFVLCNLVLHLVIMNFLG*

>Glyma09g34100.3   sequence type=predicted peptide   gene model=Glyma09g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRPKAQERLKCTPDPEKVAKRMGGSSSSSSSSSKDAQDLFRALWSAYASTPTNLKIIDLYVIYAVFTALIQVVYMALVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLAPERAFADFVLCNLVLHLVIMNFLG*

>Glyma09g34100.4   sequence type=predicted peptide   gene model=Glyma09g34100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLAPERAFADFVLCNLVLHLVIMNFLG*

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