Glyma09g34090 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g34090

Feature Type:	gene_model
Chromosome:	Gm09
Start:	40527537
stop:	40531912
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g34090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32220	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr1:11608038-11609591 FORWARD LENGTH=296	SoyBase	E_val: 4.00E-150	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG4288	KOG	Predicted oxidoreductase	JGI		ISS
PTHR12126	Panther	NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED	JGI		ISS
PTHR12126:SF2	Panther	UNCHARACTERIZED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_B6TV09	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3-beta hydroxysteroid dehydrogenase/isomerase family protein n=1 Tax=Zea mays RepID=B6TV09_MAIZE	SoyBase	E_val: 5.00E-153	ISS
UniRef100_I1L506	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L506_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g34090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g34090

Paralog	Evidence	Comments
Glyma01g01830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g34090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g207700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g34090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g34090

Limit To All Plant Sequences

>Glyma09g34090.1   sequence type=CDS   gene model=Glyma09g34090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGTTTTTGTCTTCTCTCCCTGCCGTTTCCGCTCGTCCCATCCCCACTAGTGCCTTCCCTCTCAGAAAACCTCTCTTTCAAACTCCACCCACCTTGCATTTCAAAAATCATAGGTTTGCCGTTAGCTGCAGTTACGCAGAAGCAGGTGTCAACGCTGATTCTAGCTCTAACACCATAGATGTTGTGGCTGATGTTAGAAGTGAACGGATTGTAGTCTTGGGAGGAAATGGCTTTGTTGGTTCTGCCATATGCAAGGCAGCAGTGTCCAGGGGCATAGAAGTAATAAGCCTAAGCAGGTCAGGGCGACCTACTTATTCGGATGCTTGGGTAGACCAAGTTACTTGGATTTCAGGAGATGTTTTCTATGTAAACTGGGATGAAGTACTTGTTGGAGCTACCGCAGTTGTTTCAACACTTGGAGGTTTTGGTAGTGAGGAACAGATGAAAAGAATTAATGGCGAGGCTAATGTTGTGGCTGTGAATGCTGCAAAGGAATACGGAATTCCCAAATTCATCCTGATCTCTGTTCATGATTATAACTTACCATCATTTTTACTTTCATCTGGGTACTTTACGGGAAAGAGGAAAGCAGAATCCGAGGTTCTCTCCAAATACCCCAATTCAGGTATTGTCTTAAGACCTGCTTTCATATATGGGAAGAGGAGAGTGAATGGTTATGAGCTTCCTTTGGATTTGGTAGGGGAGCCAGCAGAAAAAATTCTACGAGCAATAGAGAACTTCACCAAACCTTTAAGTTCTCTTCCTGCATCTGATTTACTCTTAGCTCCACCTGTTAGTGTTGACGATGTTGCGCTGGCTGTTATCAATGGTGTCACAGATGACGACTTCTTTGGTGTTTTTACAATTGACCAGATCAAGGACGCTGCCAATAAAGTACGGGTATGA

Predicted protein sequences of Glyma09g34090

Limit To All Plant Sequences

>Glyma09g34090.1   sequence type=predicted peptide   gene model=Glyma09g34090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFLSSLPAVSARPIPTSAFPLRKPLFQTPPTLHFKNHRFAVSCSYAEAGVNADSSSNTIDVVADVRSERIVVLGGNGFVGSAICKAAVSRGIEVISLSRSGRPTYSDAWVDQVTWISGDVFYVNWDEVLVGATAVVSTLGGFGSEEQMKRINGEANVVAVNAAKEYGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEVLSKYPNSGIVLRPAFIYGKRRVNGYELPLDLVGEPAEKILRAIENFTKPLSSLPASDLLLAPPVSVDDVALAVINGVTDDDFFGVFTIDQIKDAANKVRV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain