SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46700 | AT | Annotation by Michelle Graham. TAIR10: Tetraspanin family protein | chr5:18951035-18952439 FORWARD LENGTH=269 | SoyBase | E_val: 3.00E-135 | ISS |
| GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0008361 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell size | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0009956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: radial pattern formation | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root morphogenesis | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3882 | KOG | Tetraspanin family integral membrane protein | JGI | ISS | |
| PTHR19282 | Panther | TETRASPANIN | JGI | ISS | |
| PTHR19282:SF137 | Panther | JGI | ISS | ||
| PF00335 | PFAM | Tetraspanin family | JGI | ISS | |
| UniRef100_Q5UCF4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Senescence-associated protein DH n=1 Tax=Zea mays RepID=Q5UCF4_MAIZE | SoyBase | E_val: 3.00E-87 | ISS |
| UniRef100_UPI0001D62D6B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001D62D6B related cluster n=1 Tax=unknown RepID=UPI0001D62D6B | SoyBase | E_val: 0 | ISS |
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Glyma09g33780 not represented in the dataset |
Glyma09g33780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g205400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g33780.1 sequence type=CDS gene model=Glyma09g33780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATGAGCAACAATGTGATCGGATGCATAAACTTCGTGGCGGTGATCCTCTCAATCCCAATCATCGGCGCCGGAATCTGGCTTTTAAACGGGGAAGCCGATTCCTGCGTCCAGTTCCTGCAATGGCCCGTCATCATCCTCGGAGTCCTCATCCTCGTCGTGGCCCTCGCAGGTTTCATCGGAGCCTTCTTCAGAGTCTCGTGGCTCCTCATCGTCTACCTCGTTGCCATGCTCGTCCTCGTCATACTCTTAGTGTCTTTGGTCGCTTTTGTTTACATGGTTACTCTTCGGGGACACGGCAACATTGAGCCCAACCGCGCTTACTTGGAGTACCGCATGGATGACTTTTCTGGCTACCTTCGTCGTAGGGTTAGAAGCTCGTTCAAGTGGGACCGCATCAGAAGCTGTCTTAGCCAAACCAACATGTGTGCTGAGCTTAACCAGGGTTATCGAATGGCTCAGGACTTCTTCAACGCGCGTCTAACGCCCATGCAGTCAGGGTGCTGCAAGCCACCAACGCAATGTGCGTACACGTTTGTGAATCCAACCTATTGGATTAGTCCCATCAACACAGCAGCGGATATGGATTGCCTGCAATGGAGCAACGACCAAACACAACTTTGCTACAACTGTGACTCGTGCAAGGCAGGTTTATTGGCAAATCTTAGGAAGGAGTGGAGAAGGGCCAATGTGATATTAATCATCACAGTCATTGTTTTAATAATTGTGTATTTGGTAGGGTGTTGTGCCTTTAGGAATGCCAAAACGGAGGACCTCTTCCGCAAATACAAACAAGGCTACACTTGA
>Glyma09g33780.1 sequence type=predicted peptide gene model=Glyma09g33780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMSNNVIGCINFVAVILSIPIIGAGIWLLNGEADSCVQFLQWPVIILGVLILVVALAGFIGAFFRVSWLLIVYLVAMLVLVILLVSLVAFVYMVTLRGHGNIEPNRAYLEYRMDDFSGYLRRRVRSSFKWDRIRSCLSQTNMCAELNQGYRMAQDFFNARLTPMQSGCCKPPTQCAYTFVNPTYWISPINTAADMDCLQWSNDQTQLCYNCDSCKAGLLANLRKEWRRANVILIITVIVLIIVYLVGCCAFRNAKTEDLFRKYKQGYT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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