Glyma09g33190 - SoyBase

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Report for Sequence Feature Glyma09g33190

Feature Type:	gene_model
Chromosome:	Gm09
Start:	39702958
stop:	39706215
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g33190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38060	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr4:17873709-17874379 REVERSE LENGTH=136	SoyBase	E_val: 2.00E-25	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1L4R7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L4R7_SOYBN	SoyBase	E_val: 2.00E-118	ISS
UniRef100_Q93VQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4G38060 protein n=1 Tax=Arabidopsis thaliana RepID=Q93VQ7_ARATH	SoyBase	E_val: 8.00E-23	ISS

Expression Patterns of Glyma09g33190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g33190 not represented in the dataset	Glyma09g33190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g33190

Paralog	Evidence	Comments
Glyma01g02820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g33190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g199300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g33190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g33190

Limit To All Plant Sequences

>Glyma09g33190.3   sequence type=transcript   gene model=Glyma09g33190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGACCTTGACTTTGAACGTTCATCAGAATAATCGGTGCAATTTTGACCGTTGGATGTGAAAAGATGAAAAAGGTGATAAAATAGCTCTATAAATTCAGAAGAAGACGAGGTTTTGAGCGATTGGGTTTGGTTCTCAGTGTACCCAGAAAAAGAGGCAGAAGAAGGAAGAAGAAGAAGAAGATTAGAGAGTGAGAGAGGGATAATTGGCGAGTTAGGGTGTCGAATTGACTCACTGAGTATTTGCATTGTATCGCCGGTTTTTTTTCTTTCGCCGGAGAAAACCATTGCTCCGATCTCCTCTGCTTTTTGTTTCCGATACCATAGCCGTTTGAAAGGTTCGGTTTTTCCGGCGAGGAGTGTGGGATTTTCTGGTGATTCCTTGGTTGTGAATTGAGTTTGGCGGAATTCTCGATTTTGACCCTAAAGCAAAGGGATTTACTCAAAAGTTTTACTGGATTTCGTGTTTTTTTTTTCTTTTGATTTTTTGCATTGAGTAGACCGAACATGAGTTTGTGTCATTGTGTTTGAGATCTGGGGTTGATATTTTTTGGTAAATAAAAAAACAAGGCAGGAACCACTGGCCATTCCGTTTCTCAAATTTTGGCCGCATTCTTTCACAAATTTTGGCCACCAAAAGAGCTTCTTCAACCATTGTGACTCTTTAGCTTTAGAAATCACAATTGGGAGAGTATGGCTGTCTCTTTGACACGTTTGTCATGGTGGTTGTGGGGTAGTAGCAAGGAGAAAGAGCCTGTTTCTAGTGGCTCTACACTGAATTCATCTTCTGAATGGAGTTTTAAGGAAAGAGAGACTGTGAAGTTTCCTTCAGTGAAGGGAACAAAGATAGCTCCTTCTCACAGGAAGGTTAAAAGGAAATGGCAGAGCAGGGAAGAGAGGAGACATGATAGAGAGTATGATGTTGTGTTGGTTCCATCTGATGGTGATGGTTGTTTGTCAAGCTCTGAATCTGATGACTCAGATTTTTCCATTGGGTGGTTGGAGCCTCATGGCTCTGATTTCCTTCAGAGTGATGATGATTTGGATAATAGTTTTGCTGTGCTGGTTCCTTGCTATAGGAAGGAGGTGTCGAGTTCAAACAAGGAGCTTTTGAGTGTCATCAAGAACCTTCCAAATGAATTTTCTTCTGCTGGCAAAAATTACATGGAACACTGGCTGGCTTCTCTTCAGAATTTAGAAGCTTAGAAAACTACATCTTCTATATGACTATGGACCTTTCTGACATCCTTCTAGAAGTAGAGGAGGCAAAATAATCCATCATCCAATGTATTTTTTGTACATAGAATCATCCTCTCTTACTGTAAAAGCTTAAATTGAAATGGAAAATTTCGATCTAGAAAAGTTCTATATGGCCAATCAATCACCACTATAATAAAAAGGATTTTACTAAAAAAATTGGGATTTTCATGTTGATAATGGTGTTATAATGGAGGATTGCAAGAGTCATGTTTTAGATAAG

>Glyma09g33190.4   sequence type=transcript   gene model=Glyma09g33190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATGTGTGAGGGGTGTAGAGTAAGACGATGAGACCTTGACTTTGAACGTTCATCAGAATAATCGGTGCAATTTTGACCGTTGGATGTGAAAAGATGAAAAAGGTGATAAAATAGCTCTATAAATTCAGAAGAAGACGAGGTTTTGAGCGATTGGGTTTGGTTCTCAGTGTACCCAGAAAAAGAGGCAGAAGAAGGAAGAAGAAGAAGAAGATTAGAGAGTGAGAGAGGGATAATTGGCGAGTTAGGGTGTCGAATTGACTCACTGAGTATTTGCATTGTATCGCCGGTTTTTTTTCTTTCGCCGGAGAAAACCATTGCTCCGATCTCCTCTGCTTTTTGTTTCCGATACCATAGCCGTTTGAAAGGTTCGGTTTTTCCGGCGAGGAGTGTGGGATTTTCTGGTGATTCCTTGGTTGTGAATTGAGTTTGGCGGAATTCTCGATTTTGACCCTAAAGCAAAGGGATTTACTCAAAAGTTTTACTGGATTTCGTGTTTTTTTTTTCTTTTGATTTTTTGCATTGAGTAGACCGAACATGAGTTTGTGTCATTGTGTTTGAGATCTGGGGTTGATATTTTTTGGTAAATAAAAAAACAAGGTAAAAATTTATTCTTTTGAGATTCTGATAACTATCTTATCCTTTTCTTCTTTATTTTTTTTAATATTCTCTTGTGCTTTTCTGGGAGCGTAAATGTCTAGATAATTTTTGCTGACATTTAATTTTGGGAAATGGGTCAGTGAATCTAGGCTAAGTTCTTCAACTTGCTAAATTAGGTTTGATATTTGAAAAAAAACAAAACCTTTTGTAAATTCACTGAATCTGTTTCATCCGTGTTTGTGCTCTTTTATCTTTCAAAAAAATTGCGTTTTTATTGGTTGTTATCGATATTAGTTAATAGGTTTGTTGGGTTGAATTTATTTTTGTGCCACATTTTCCAATTGATTTCCTTTTGCTAATGAATCAATGGATCATTTCCTAATATAGTGGTTTCCGCAACAGGCAGGAACCACTGGCCATTCCGTTTCTCAAATTTTGGCCGCATTCTTTCACAAATTTTGGCCACCAAAAGAGCTTCTTCAACCATTGTGACTCTTTAGCTTTAGAAATCACAATTGGGAGAGTATGGCTGTCTCTTTGACACGTTTGTCATGGTGGTTGTGGGGTAGTAGCAAGGAGAAAGAGCCTGTTTCTAGTGGCTCTACACTGAATTCATCTTCTGAATGGAGTTTTAAGGAAAGAGAGACTGTGAAGTTTCCTTCAGTGAAGGGAACAAAGATAGCTCCTTCTCACAGGAAGGTTAAAAGGAAATGGCAGAGCAGGGAAGAGAGGAGACATGATAGAGAGTATGATGTTGTGTTGGTTCCATCTGATGGTGATGGTTGTTTGTCAAGCTCTGAATCTGATGACTCAGATTTTTCCATTGGGTGGTTGGAGCCTCATGGCTCTGATTTCCTTCAGAGTGATGATGATTTGGATAATAGTTTTGCTGTGCTGGTTCCTTGCTATAGGAAGGAGGTGTCGAGTTCAAACAAGGAGCTTTTGAGTGTCATCAAGAACCTTCCAAATGAATTTTCTTCTGCTGGCAAAAATTACATGGAACACTGGCTGGCTTCTCTTCAGAATTTAGAAGCTTAGAAAACTACATCTTCTATATGACTATGGACCTTTCTGACATCCTTCTAGAAGTAGAGGAGGCAAAATAATCCATCATCCAATGTATTTTTTGTACATAGAATCATCCTCTCTTACTGTAAAAGCTTAAATTGAAATGGAAAATTTCGATCTAGAAAAGTTCTATATGGCCAATCAATCACCACTATAATAAAAAGGATTTTACTAAAAAAATTGGGATTTTCATGTTGATAATGGTGTTATAATGGAGGATTGCAAGAGTCATGTTTTAGATAAG

Coding sequences of Glyma09g33190

Limit To All Plant Sequences

>Glyma09g33190.2   sequence type=CDS   gene model=Glyma09g33190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTCTCTTTGACACGTTTGTCATGGTGGTTGTGGGGTAGTAGCAAGGAGAAAGAGCCTGTTTCTAGTGGCTCTACACTGAATTCATCTTCTGAATGGAGTTTTAAGGAAAGAGAGACTGTGAAGTTTCCTTCAGTGAAGGGAACAAAGATAGCTCCTTCTCACAGGAAGGTTAAAAGGAAATGGCAGAGCAGGGAAGAGAGGAGACATGATAGAGAGTATGATGTTGTGTTGGTTCCATCTGATGGTGATGGTTGTTTGTCAAGCTCTGAATCTGATGACTCAGATTTTTCCATTGGGTGGTTGGAGCCTCATGGCTCTGATTTCCTTCAGAGTGATGATGATTTGGATAATAGTTTTGCTGTGCTGGTTCCTTGCTATAGGAAGGAGGTGTCGAGTTCAAACAAGGAGCTTTTGAGTGTCATCAAGAACCTTCCAAATGAATTTTCTTCTGCTGGCAAAAATTACATGGAACACTGGCTGGCTTCTCTTCAGAATTTAGAAGCTTAG

>Glyma09g33190.3   sequence type=CDS   gene model=Glyma09g33190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTCTCTTTGACACGTTTGTCATGGTGGTTGTGGGGTAGTAGCAAGGAGAAAGAGCCTGTTTCTAGTGGCTCTACACTGAATTCATCTTCTGAATGGAGTTTTAAGGAAAGAGAGACTGTGAAGTTTCCTTCAGTGAAGGGAACAAAGATAGCTCCTTCTCACAGGAAGGTTAAAAGGAAATGGCAGAGCAGGGAAGAGAGGAGACATGATAGAGAGTATGATGTTGTGTTGGTTCCATCTGATGGTGATGGTTGTTTGTCAAGCTCTGAATCTGATGACTCAGATTTTTCCATTGGGTGGTTGGAGCCTCATGGCTCTGATTTCCTTCAGAGTGATGATGATTTGGATAATAGTTTTGCTGTGCTGGTTCCTTGCTATAGGAAGGAGGTGTCGAGTTCAAACAAGGAGCTTTTGAGTGTCATCAAGAACCTTCCAAATGAATTTTCTTCTGCTGGCAAAAATTACATGGAACACTGGCTGGCTTCTCTTCAGAATTTAGAAGCTTAG

>Glyma09g33190.4   sequence type=CDS   gene model=Glyma09g33190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTCTCTTTGACACGTTTGTCATGGTGGTTGTGGGGTAGTAGCAAGGAGAAAGAGCCTGTTTCTAGTGGCTCTACACTGAATTCATCTTCTGAATGGAGTTTTAAGGAAAGAGAGACTGTGAAGTTTCCTTCAGTGAAGGGAACAAAGATAGCTCCTTCTCACAGGAAGGTTAAAAGGAAATGGCAGAGCAGGGAAGAGAGGAGACATGATAGAGAGTATGATGTTGTGTTGGTTCCATCTGATGGTGATGGTTGTTTGTCAAGCTCTGAATCTGATGACTCAGATTTTTCCATTGGGTGGTTGGAGCCTCATGGCTCTGATTTCCTTCAGAGTGATGATGATTTGGATAATAGTTTTGCTGTGCTGGTTCCTTGCTATAGGAAGGAGGTGTCGAGTTCAAACAAGGAGCTTTTGAGTGTCATCAAGAACCTTCCAAATGAATTTTCTTCTGCTGGCAAAAATTACATGGAACACTGGCTGGCTTCTCTTCAGAATTTAGAAGCTTAG

Predicted protein sequences of Glyma09g33190

Limit To All Plant Sequences

>Glyma09g33190.2   sequence type=predicted peptide   gene model=Glyma09g33190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSLTRLSWWLWGSSKEKEPVSSGSTLNSSSEWSFKERETVKFPSVKGTKIAPSHRKVKRKWQSREERRHDREYDVVLVPSDGDGCLSSSESDDSDFSIGWLEPHGSDFLQSDDDLDNSFAVLVPCYRKEVSSSNKELLSVIKNLPNEFSSAGKNYMEHWLASLQNLEA*

>Glyma09g33190.3   sequence type=predicted peptide   gene model=Glyma09g33190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSLTRLSWWLWGSSKEKEPVSSGSTLNSSSEWSFKERETVKFPSVKGTKIAPSHRKVKRKWQSREERRHDREYDVVLVPSDGDGCLSSSESDDSDFSIGWLEPHGSDFLQSDDDLDNSFAVLVPCYRKEVSSSNKELLSVIKNLPNEFSSAGKNYMEHWLASLQNLEA*

>Glyma09g33190.4   sequence type=predicted peptide   gene model=Glyma09g33190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSLTRLSWWLWGSSKEKEPVSSGSTLNSSSEWSFKERETVKFPSVKGTKIAPSHRKVKRKWQSREERRHDREYDVVLVPSDGDGCLSSSESDDSDFSIGWLEPHGSDFLQSDDDLDNSFAVLVPCYRKEVSSSNKELLSVIKNLPNEFSSAGKNYMEHWLASLQNLEA*

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