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Report for Sequence Feature Glyma09g33170
Feature Type: gene_model
Chromosome: Gm09
Start: 39678681
stop: 39686441
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g33170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G10490 AT
Annotation by Michelle Graham. TAIR10: MSCS-like 2 | chr5:3300376-3304005 REVERSE LENGTH=673
SoyBase E_val: 0 ISS
GO:0009657 GO-bp
Annotation by Michelle Graham. GO Biological Process: plastid organization
SoyBase N/A ISS
GO:0010020 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast fission
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009526 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid envelope
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005216 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ion channel activity
SoyBase N/A ISS
PF00924 PFAM
Mechanosensitive ion channel
JGI ISS
UniRef100_G7JWE5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MscS-Like mechanosensitive ion channel MSCL8 n=1 Tax=Medicago truncatula RepID=G7JWE5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1L4R5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L4R5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g33170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g33170
Paralog Evidence Comments
Glyma01g02840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g33170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g199100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g33170
Transcripts of Glyma09g33170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g33170.2 sequence type=transcript gene model=Glyma09g33170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTATTTTTTAATTTAAATAAAAACAAAAAATAATGGCTCTGTTCTGTTCCTTTGCGCTGCGCCTCGTAAAGGCTGACTGACAAAAAACCATTGGCGGGTGGAAGCTTTGAGAGAGTCAGAGTTTAACTGCAGGTAACTGAGTTGAGAGATTATCAAAGTCCGTCAGCAGCACTTGATCTGCATAGAACGTGTCCAATTGTGTAAAAAGTCTGAAATACTATACTATATTTATACATTCTCCAGCTACTAGTGAGACCTTCTTGGATATCTGTTTCGATACAATAATGGCTCTTCCCGGTTCCCTGCAGTTGTCCCATGGATTGGGACTTTGCAGGAACCTGGACTGCAATAAACATTCGAGGGCAGCGGATCATGGCAAATTACATTTATATAGTGCAGGTCCTTCATATCCTATTTCGTTCATGAGACAGGAATGCAGGGGTTTTCAACACCTTCGTCATATAAACAGGCCAGCACATACATTATCTTGCAAATCCCGCTCTTTTAAGTGTCATTGTTTTTTAGGCCAACCAAATGAGCTTCCTGCTGTTAAGGTGGCTGCTACAGTGTTGGCTAGGTCTTGTAATGTGTTACAAAATAGTCCTACCATAGTAAAGTTGATTCCTGCAGTTGGTGTTATCATTTTTGCAGTATGGGGTGTTGGTCCATTATTGTTTCAGACAAGGAAATTACTTTTCCAGAGGAGTGATAGTAGTTGGAAGAGAAGTACCACTTACTATATAATAACTTCTTACCTTCAGCCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCATTAATCCTACCTTCAGAAACTAGCCAGGTTGTTAAGGAACGACTTTTGAATTTTGTAAGATCATTATCAACAGTACTGGCCTTCGCCTATTGTTTGTCAAGTGTAATTCAGCAAGCGCAGAAATTCTTAGCAGAGAGTACTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGCTGGCAAAGCTGTTTACTCTGCGGTATGGATAGCTGCCTTTTCACTGTTCATGGAATTGCTGGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGTTGACCCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCGAGTGTGATGATTCATGCAACCCGGCCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACCGTCGAGCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGTATCAAAACCCATCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGAGGAAAGTCTTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGACAACATAAATCCTGAAAATCAGGCACTTTTGATTCTGGTGTCGTGTTTTGTTAAGACCTCACATTTTGAAGAATATCTGTGTGTTAAGGAAGCTGTACTGTTGGATCTTCTTAGAGTTATTGGCCATCACCGAGCCCGACTTGCCACACCAGTCCGTACCCTGCAGAAAATATACAGTGATGCTGACTTGGAGAACATACCATTTGCAGATTCGACATTTGGTCGTGGTGCTGGGACAGTACCTAACCGTCCATTATTAGTGATCGAACCATCTTATAAGATCAATGGAGATGATAAGAAAAGTCGATCGGCACGGCCAGCTGTTGATCAAGATAACAAGACAGCTACGCGAACCAAAGTTGACACTGAGGGGGATAACAAAGTTGTGACACCTAACTCTGATGCAAATGGAAACTCTAAGACAGTTGTGACTCCTAACTCTGATGCAAATGGAAACTCTAAGACAGTTGTGACACCCAAACCTGATCCTGAAGTGGGTGAAAACAAGCCACTGAAATCAGATTCAAGCAGGGAGAACGTGGAGGTGCCAGAATCTCCTTCTAAATCCAAAGTTACTGGTTTGGTAGTGGATAATTCAGCCCAGAAGGACGTAGATGTCAAACAAGCCAAGGTTCATACCACTAAAAACACAAAGCCAAATATTGACTCTGACAATGTAGTGTCCTCCTCCTCAACTAACAATGCTGACAAAACTGGTGGATTTAATACGAATATGCCAATGAAACAGCAAGGGGAAAAGAAACCTGCTGCACAGCCTCATGCATCCAGGACTGTTCTTGAAGAGAATATAGTACTAGGTGTTGCATTGGAGGGATCAAAGAGGACACTTCCCATTGATGAAGAGATTGACAATGTGACATCTCGAGAGGCAAAGGAAATGGCTGCATTGCAGAGTGGAAATGGATCTCCAAAGGCTCCAGATGGAAATGACAACTAGTTATTATAAGCAGCGAGTTCGACTAGTTAGCTCGTGTTTGCATTGCAGTTACGTCCAATGTAACTCCAATCCAACACCACTCTTGTTTCTACTTTTGTACATTGGAAAGTGGGAAATGTTTGTTCAACGGGATTACAACGGTTTTCCAAACACATCCTTAGTTGTTTGAAAGCTATGTTCCAAGTCCAACAGTACACTGCTTTGAACCAGTTTCCCACCCCTAGGAAGTTGTATGTATTATCACTTCCATGTGTCACACCCCTTTTACAAAGGACTCGAGCTGTATTGTCATATCTCTTCATTTTTTGCTGTTTCAGCAATATATGGAAAATGGCTTTCATCAATTATTGGATTATACTGTCAAATTGTTTATTATGGATTTTTTTTTTACTAGAAGATCATCCACAAATGAATAGTTATAAAATTTGGATGTACACTTCATTTTTAAAGAACATCAGAAAGTAATGGATTGTAAACACAACCTTGTGTAAATAAGTGTCAATTGTTCTGAACAAAT
Coding sequences of Glyma09g33170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g33170.1 sequence type=CDS gene model=Glyma09g33170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCTTCCCGGTTCCCTGCAGTTGTCCCATGGATTGGGACTTTGCAGGAACCTGGACTGCAATAAACATTCGAGGGCAGCGGATCATGGCAAATTACATTTATATAGTGCAGGTCCTTCATATCCTATTTCGTTCATGAGACAGGAATGCAGGGGTTTTCAACACCTTCGTCATATAAACAGGCCAGCACATACATTATCTTGCAAATCCCGCTCTTTTAAGTGTCATTGTTTTTTAGGCCAACCAAATGAGCTTCCTGCTGTTAAGGTGGCTGCTACAGTGTTGGCTAGGTCTTGTAATGTGTTACAAAATAGTCCTACCATAGTAAAGTTGATTCCTGCAGTTGGTGTTATCATTTTTGCAGTATGGGGTGTTGGTCCATTATTGTTTCAGACAAGGAAATTACTTTTCCAGAGGAGTGATAGTAGTTGGAAGAGAAGTACCACTTACTATATAATAACTTCTTACCTTCAGCCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCATTAATCCTACCTTCAGAAACTAGCCAGGTTGTTAAGGAACGACTTTTGAATTTTGTAAGATCATTATCAACAGTACTGGCCTTCGCCTATTGTTTGTCAAGTGTAATTCAGCAAGCGCAGAAATTCTTAGCAGAGAGTACTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGCTGGCAAAGCTGTTTACTCTGCGGTATGGATAGCTGCCTTTTCACTGTTCATGGAATTGCTGGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGTTGACCCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCGAGTGTGATGATTCATGCAACCCGGCCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACCGTCGAGCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGTATCAAAACCCATCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGAGGAAAGTCTTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGACAACATAAATCCTGAAAATCAGGCACTTTTGATTCTGGTGTCGTGTTTTGTTAAGACCTCACATTTTGAAGAATATCTGTGTGTTAAGGAAGCTGTACTGTTGGATCTTCTTAGAGTTATTGGCCATCACCGAGCCCGACTTGCCACACCAGTCCGTACCCTGCAGAAAATATACAGTGATGCTGACTTGGAGAACATACCATTTGCAGATTCGACATTTGGTCGTGGTGCTGGGACAGTACCTAACCGTCCATTATTAGTGATCGAACCATCTTATAAGATCAATGGAGATGATAAGAAAAGTCGATCGGCACGGCCAGCTGTTGATCAAGATAACAAGACAGCTACGCGAACCAAAGTTGACACTGAGGGGGATAACAAAGTTGTGACACCTAACTCTGATGCAAATGGAAACTCTAAGACAGTTGTGACTCCTAACTCTGATGCAAATGGAAACTCTAAGACAGTTGTGACACCCAAACCTGATCCTGAAGTGGGTGAAAACAAGCCACTGAAATCAGATTCAAGCAGGGAGAACGTGGAGGTGCCAGAATCTCCTTCTAAATCCAAAGTTACTGGTTTGGTAGTGGATAATTCAGCCCAGAAGGACGTAGATGTCAAACAAGCCAAGGTTCATACCACTAAAAACACAAAGCCAAATATTGACTCTGACAATGTAGTGTCCTCCTCCTCAACTAACAATGCTGACAAAACTGGTGGATTTAATACGAATATGCCAATGAAACAGCAAGGGGAAAAGAAACCTGCTGCACAGCCTCATGCATCCAGGACTGTTCTTGAAGAGAATATAGTACTAGGTGTTGCATTGGAGGGATCAAAGAGGACACTTCCCATTGATGAAGAGATTGACAATGTGACATCTCGAGAGGCAAAGGAAATGGCTGCATTGCAGAGTGGAAATGGATCTCCAAAGGCTCCAGATGGAAATGACAACTAG
>Glyma09g33170.2 sequence type=CDS gene model=Glyma09g33170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCTTCCCGGTTCCCTGCAGTTGTCCCATGGATTGGGACTTTGCAGGAACCTGGACTGCAATAAACATTCGAGGGCAGCGGATCATGGCAAATTACATTTATATAGTGCAGGTCCTTCATATCCTATTTCGTTCATGAGACAGGAATGCAGGGGTTTTCAACACCTTCGTCATATAAACAGGCCAGCACATACATTATCTTGCAAATCCCGCTCTTTTAAGTGTCATTGTTTTTTAGGCCAACCAAATGAGCTTCCTGCTGTTAAGGTGGCTGCTACAGTGTTGGCTAGGTCTTGTAATGTGTTACAAAATAGTCCTACCATAGTAAAGTTGATTCCTGCAGTTGGTGTTATCATTTTTGCAGTATGGGGTGTTGGTCCATTATTGTTTCAGACAAGGAAATTACTTTTCCAGAGGAGTGATAGTAGTTGGAAGAGAAGTACCACTTACTATATAATAACTTCTTACCTTCAGCCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCATTAATCCTACCTTCAGAAACTAGCCAGGTTGTTAAGGAACGACTTTTGAATTTTGTAAGATCATTATCAACAGTACTGGCCTTCGCCTATTGTTTGTCAAGTGTAATTCAGCAAGCGCAGAAATTCTTAGCAGAGAGTACTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGCTGGCAAAGCTGTTTACTCTGCGGTATGGATAGCTGCCTTTTCACTGTTCATGGAATTGCTGGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGTTGACCCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCGAGTGTGATGATTCATGCAACCCGGCCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACCGTCGAGCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGTATCAAAACCCATCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGAGGAAAGTCTTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGACAACATAAATCCTGAAAATCAGGCACTTTTGATTCTGGTGTCGTGTTTTGTTAAGACCTCACATTTTGAAGAATATCTGTGTGTTAAGGAAGCTGTACTGTTGGATCTTCTTAGAGTTATTGGCCATCACCGAGCCCGACTTGCCACACCAGTCCGTACCCTGCAGAAAATATACAGTGATGCTGACTTGGAGAACATACCATTTGCAGATTCGACATTTGGTCGTGGTGCTGGGACAGTACCTAACCGTCCATTATTAGTGATCGAACCATCTTATAAGATCAATGGAGATGATAAGAAAAGTCGATCGGCACGGCCAGCTGTTGATCAAGATAACAAGACAGCTACGCGAACCAAAGTTGACACTGAGGGGGATAACAAAGTTGTGACACCTAACTCTGATGCAAATGGAAACTCTAAGACAGTTGTGACTCCTAACTCTGATGCAAATGGAAACTCTAAGACAGTTGTGACACCCAAACCTGATCCTGAAGTGGGTGAAAACAAGCCACTGAAATCAGATTCAAGCAGGGAGAACGTGGAGGTGCCAGAATCTCCTTCTAAATCCAAAGTTACTGGTTTGGTAGTGGATAATTCAGCCCAGAAGGACGTAGATGTCAAACAAGCCAAGGTTCATACCACTAAAAACACAAAGCCAAATATTGACTCTGACAATGTAGTGTCCTCCTCCTCAACTAACAATGCTGACAAAACTGGTGGATTTAATACGAATATGCCAATGAAACAGCAAGGGGAAAAGAAACCTGCTGCACAGCCTCATGCATCCAGGACTGTTCTTGAAGAGAATATAGTACTAGGTGTTGCATTGGAGGGATCAAAGAGGACACTTCCCATTGATGAAGAGATTGACAATGTGACATCTCGAGAGGCAAAGGAAATGGCTGCATTGCAGAGTGGAAATGGATCTCCAAAGGCTCCAGATGGAAATGACAACTAG
Predicted protein sequences of Glyma09g33170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g33170.1 sequence type=predicted peptide gene model=Glyma09g33170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALPGSLQLSHGLGLCRNLDCNKHSRAADHGKLHLYSAGPSYPISFMRQECRGFQHLRHINRPAHTLSCKSRSFKCHCFLGQPNELPAVKVAATVLARSCNVLQNSPTIVKLIPAVGVIIFAVWGVGPLLFQTRKLLFQRSDSSWKRSTTYYIITSYLQPLLLWTGAILICRALEPLILPSETSQVVKERLLNFVRSLSTVLAFAYCLSSVIQQAQKFLAESTDASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAVLLDLLRVIGHHRARLATPVRTLQKIYSDADLENIPFADSTFGRGAGTVPNRPLLVIEPSYKINGDDKKSRSARPAVDQDNKTATRTKVDTEGDNKVVTPNSDANGNSKTVVTPNSDANGNSKTVVTPKPDPEVGENKPLKSDSSRENVEVPESPSKSKVTGLVVDNSAQKDVDVKQAKVHTTKNTKPNIDSDNVVSSSSTNNADKTGGFNTNMPMKQQGEKKPAAQPHASRTVLEENIVLGVALEGSKRTLPIDEEIDNVTSREAKEMAALQSGNGSPKAPDGNDN*
>Glyma09g33170.2 sequence type=predicted peptide gene model=Glyma09g33170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALPGSLQLSHGLGLCRNLDCNKHSRAADHGKLHLYSAGPSYPISFMRQECRGFQHLRHINRPAHTLSCKSRSFKCHCFLGQPNELPAVKVAATVLARSCNVLQNSPTIVKLIPAVGVIIFAVWGVGPLLFQTRKLLFQRSDSSWKRSTTYYIITSYLQPLLLWTGAILICRALEPLILPSETSQVVKERLLNFVRSLSTVLAFAYCLSSVIQQAQKFLAESTDASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAVLLDLLRVIGHHRARLATPVRTLQKIYSDADLENIPFADSTFGRGAGTVPNRPLLVIEPSYKINGDDKKSRSARPAVDQDNKTATRTKVDTEGDNKVVTPNSDANGNSKTVVTPNSDANGNSKTVVTPKPDPEVGENKPLKSDSSRENVEVPESPSKSKVTGLVVDNSAQKDVDVKQAKVHTTKNTKPNIDSDNVVSSSSTNNADKTGGFNTNMPMKQQGEKKPAAQPHASRTVLEENIVLGVALEGSKRTLPIDEEIDNVTSREAKEMAALQSGNGSPKAPDGNDN*