SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51480 | AT | Annotation by Michelle Graham. TAIR10: glutamate receptor 3.6 | chr3:19101256-19104681 FORWARD LENGTH=903 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006874 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis | SoyBase | N/A | ISS |
| GO:0007186 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0004965 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: G-protein coupled GABA receptor activity | SoyBase | N/A | ISS |
| GO:0004970 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ionotropic glutamate receptor activity | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005217 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: intracellular ligand-gated ion channel activity | SoyBase | N/A | ISS |
| GO:0005234 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: extracellular-glutamate-gated ion channel activity | SoyBase | N/A | ISS |
| KOG1052 | KOG | Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits | JGI | ISS | |
| PTHR18966 | Panther | IONOTROPIC GLUTAMATE RECEPTOR-RELATED | JGI | ISS | |
| PTHR18966:SF7 | Panther | gb def: agcp6329 [anopheles gambiae str. pest] | JGI | ISS | |
| PF00060 | PFAM | Ligand-gated ion channel | JGI | ISS | |
| PF00497 | PFAM | Bacterial extracellular solute-binding proteins, family 3 | JGI | ISS | |
| PF01094 | PFAM | Receptor family ligand binding region | JGI | ISS | |
| UniRef100_I1L4P7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamate receptor n=1 Tax=Glycine max RepID=I1L4P7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337CF5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337CF5 related cluster n=1 Tax=unknown RepID=UPI0002337CF5 | SoyBase | E_val: 0 | ISS |
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Glyma09g32980 not represented in the dataset |
Glyma09g32980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g21470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g197100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g32980.1 sequence type=CDS gene model=Glyma09g32980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTCCAAAGGGCATCTGCAACCATGATTGGAGTTTGGATTGTTGTGTTGATGGTTCTCTCCAAAGGATTATCTTCAAGTGGGGTAGTATCAGATAATTCCACAATACCTGCTTTTGTAAATATTGGGGTTCTCTATTCTTTCAATACCAGTGTTGGTAGAATGGTGAAAACTGCTGTACAAGCTGCGGTTGACGATGTAAATTTTGATCAATCTATTCTTGCTAACACTAAGTTGAAGGCCTCACTGCAAGAAGATACCAAATACAGAGGTTTTCTGAGCATTGCCGAGGCCTTGCAGCTCATGGCAACACAAACTGTGGCTATAATCGGTCCCCAGACGTCTACAACAGCTCATGTCATATCTCATATAGCGAACGAGCTCCAAGTTCCTCTACTATCATTTACAGCCACTGACCCTACTCTTTCTTCACTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACATTTATGAAATGACTGCAATAGCAGACTTTGTTAACTACTTTGGCTGGAGAGAGGTTATTGCTGTTTATGGTGATGATGACCATGGGAGGAATGGAATAGGTGCATTAGGGGATAAGCTTGCCGAGAGACGTTGCAAGATCTCATTTAAAGCACCTATGACTCCTGAGACAACCAGGGAGGAGATTACTGATGTGCTTGTTCAGGTGGCCTTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGCCCAAAAGTGTTAAGTGTGGCAAAGTCTCTGGGAATGATGGAAAACGGGTATGTCTGGATAACAACTACTTTTCTGTCTACTTGGCTGGATATAGGTAGTCCCCTATCTTCGGATGCAACAGATGACATGCAAGGAGTCATTACACTACGTATGTATATACCAGATTCAGAGCGCAAAAGATGGTTTTTTTCAAGGTGGAAAAACTTGACTACGGGAAAGACTGCTAATGGTTCCCAGGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTACGCTCTTGCTCATGCACTTGATGCATTTTTCAAACAAGGGAACCAAATTACATTTTCACGTGATCCAAAGTTATCTCAACTACGTGGAGACAACATGCATCTTGATGCTGTGAAAATATTCAATGAAGGAAAGCTGTTGCGTAAATATATTTATGAGGTTAACATGACTGGTGTATCAGGTCTATTCAAGTATACATCTGATGGAAACCTTGTTAATCCTGCTTATGAAATCATCAATGTTATTGGAACAGGGACTCGGAGGGTTGGTTATTGGTCTAATTACACTGGATTATCAATTGTTCCTCCTGAAGCACTTTATTCAAAACCACCTAATCGATCCAGTGCAAGCCAAAAGCTACTCCCTGTGCTTTGGCCAGGAGAAACAACCCATAGGCCCCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTGCCAAAAAGGGTTAGTTATCGAGAATTTGTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTTTGCATTGATGTATTTCTTTCTGCTGTGAACTTGTTGCCCTATGCTGTCCCTTATAAATTTGTTTCATATGGGGATGGTGACAGCAATCCTAGTAACACTGAGCTTGTCCGTCTTATCACAGCTGGTGTCTTCGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATCGAGTCTGGTTTAGTGGTAGTTGCATCAGTTAAGAAGACAGATTCCAATGCTTGGGCTTTTTTGACGCCATTTACACCAATGATGTGGACTGTCACAGCTGTCTTTTTTCTACTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGATTTTAGGGGACCTCCCAAACAACAAATGGTCACCATTTTGTGGTTTAGTTTTTCAACCATGTTCTTTGCTCACAGGGAAAACACAGTGAGCACTCTCGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCAAGCTTGACATCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGAAAGTTTAATAAGTAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCATTTACGCGAACTTATTTAATTGACGAAATTGGTATTGATGAATCCAGACTAGTTCCTCTGAAAACACCAGAAGAAACTACAGAAGCACTTAAGAAAGGTCCCCAGAAGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTTGCCTTTCCTCGAGACTCACCGTTAGCGGTTGACCTTTCAACTGCAATATTAGAGTTGGCAGAGAATGGAGACTTGCAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGCCTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAACCTGAGAAGCTTTTGGGGCCTCTATCTGGTGTGTGGGTTGGCATGTGTGCTTGCTCTCCTAATATATTTTATTCAGACCATGAGGCAGTACTCCAAGCATGGCCCAGAGGAGCTCGAATCTTCTGGCCATGGCTCAGGATCTTCGCGTTTGCGCACATTCCTTACATTCGTAGATGAAAAGGAAGAGATAGTTAAGAGCCGCTCCAAGAGAAAAAAAATGGAGGGGATATCTTACAGAAGCACAAGTGAGGTTGGATCATCCATCACCTTCAACAAAGCATATTCTCAGGCATCATTAAACAGAATTGATTCAGTTAATGAAATCTAA
>Glyma09g32980.1 sequence type=predicted peptide gene model=Glyma09g32980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFQRASATMIGVWIVVLMVLSKGLSSSGVVSDNSTIPAFVNIGVLYSFNTSVGRMVKTAVQAAVDDVNFDQSILANTKLKASLQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTAFSDIYEMTAIADFVNYFGWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMTPETTREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDIGSPLSSDATDDMQGVITLRMYIPDSERKRWFFSRWKNLTTGKTANGSQGLSTYGIFAYDTVYALAHALDAFFKQGNQITFSRDPKLSQLRGDNMHLDAVKIFNEGKLLRKYIYEVNMTGVSGLFKYTSDGNLVNPAYEIINVIGTGTRRVGYWSNYTGLSIVPPEALYSKPPNRSSASQKLLPVLWPGETTHRPRGWVFPNNGRMLKIGVPKRVSYREFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAVFFLLVGAVVWILEHRLNDDFRGPPKQQMVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLISSKEPIGYLQGSFTRTYLIDEIGIDESRLVPLKTPEETTEALKKGPQKGGVAAYVDERAYIELFLSSRCDYSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLNLRSFWGLYLVCGLACVLALLIYFIQTMRQYSKHGPEELESSGHGSGSSRLRTFLTFVDEKEEIVKSRSKRKKMEGISYRSTSEVGSSITFNKAYSQASLNRIDSVNEI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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