SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G17520 | AT | Annotation by Michelle Graham. TAIR10: Endoribonuclease/protein kinase IRE1-like | chr2:7617504-7620929 FORWARD LENGTH=841 | SoyBase | E_val: 0 | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006987 | GO-bp | Annotation by Michelle Graham. GO Biological Process: activation of signaling protein activity involved in unfolded protein response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0042406 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0004521 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0016891 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity, producing 5'-phosphomonoesters | SoyBase | N/A | ISS |
| KOG1027 | KOG | Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway | JGI | ISS | |
| PTHR13954 | Panther | IRE1-RELATED | JGI | ISS | |
| PTHR13954:SF4 | Panther | SERINE THREONIN KINASE | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF06479 | PFAM | Ribonuclease 2-5A | JGI | ISS | |
| UniRef100_G7L8P6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase/endoribonuclease IRE1 n=1 Tax=Medicago truncatula RepID=G7L8P6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337CF4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337CF4 related cluster n=1 Tax=unknown RepID=UPI0002337CF4 | SoyBase | E_val: 0 | ISS |
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Glyma09g32970 not represented in the dataset |
Glyma09g32970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g21480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g197000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g32970.2 sequence type=CDS gene model=Glyma09g32970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTTTCTTCCTTTTCTCATTTCCTTCCTTTTTGCCTCCCTAATCGCAACCTCCGGAACGCCGCATCCCAATGAAGAACGCCTCAACATCCACAGTGCACTTCATCATCGACCCGCTTCCCGATCCCTTCTCTCTCTTCCACCTAAGGCTGCAACCACAGCACTGATTGTGACCCTAGATGGGACTATGTACTTGGTGGATCAATTGGAGAGTGGTTCCACGAGAGTCATATGGTCGTTCTCGACAGGATTGCCAATCTACCAATCATATCAAGCACCAACTAAAAAGGATAATGGTAAAGAAAATGCATCTGCAGCACTGATGAGTGGGTTCATGGAATGCGGGGAAGGGAATGACTGGTCATTGTATATGCACGACAAGCACTTTGGTAAAATGAGAATATCAGAATCTATTGCAGAATATGTAGCTCGTACACCTACATTTTCAGATGATGGAGCAGTAACACTTGGATCCAAAAGAAGCACTTTGTTTGAAGTTGATGCTAAAAGTGGATCAATCATTAAAATCCATGCGATGTCTGATTTTGATAATGCTTCTGCACCTTGTAGTGATGGAAAGCAGGGTGTCACAAATATCCTCAATGTAAAGAATAAGGACCTTGCTGATCCCATGAAGCTGAATTCACCTCAGCCGCTGCTTAAGATTTTTAGGACAGATTATTCTCTTAAATCTGTTGGTCCTAGCTCAGGAATGGTTTTGTGGACTATGGCAGTAGCTGAATTTGAGGCTGTATTATTATGCCAACATACATCTTTTGATCTAGAGGATGAGTATGCTTCTGACAGTAGCCTCAATTTTAGGATGCCATACCCATGTCAAGAGATAAACCAAGTCTTTCGCCTGAAAAAGAATTTCCGGTTTGAACCTTCACTAACTGAAAGACTACTTGTGGATTATCATGAAAATGATATGCTCTCGATGCCTAACTCAAAGCTAATGCTTCCTTCACAGCCAAATATTGATAGATTATTCAATGGTCATGATGATAATATGATGCTCCCTCAACCTCCTGTGGAGATTACAACACCAGGGGAAGTTTATCTGAACAGGACAAGTGAATGGCCAACTCCATTACCTCTTATATTGTTTACGGTCTTTCTTCTGGCCTTTTCACTCATCTATCCTCTAGTGATTGAGAACCAAGATATACTCAAGGACCAAGACAGTGAGTCTGAATTAAAAGGTTCACCTGCTAAGAAAAAGAAAACACGGAAATCAGGGAAGAAAAATGGCACTATCGATACAAGGGAAAAACACCTGTCTCCAGAGAATGAGGATGTTCTGACACAAAAGGATAATGAGAGAGAAGTATGGAAGCATTTCAATCAAGGTGATGAAAGTGTTGATGGACGAAGAATTGGTAAATTATTTGTTTCAAATAAAGAGATTGCTAAGGGAAGCAACGGTACCATTGTCCTTGAGGGAATATATGAATGCCGGGTAGTTGCTGTTAAACGTCTTGTCAAGTCTCATCATGATGTAGCTTATAAAGAAATCCAAAATCTGATTGTGTCTGATCATCATCCAAATATTGTTCGATGGCATGGAGTAGAGTATGATAGTGATTTTGTTTACCTTGCTTTGGAACGTTGTACATGCAATTTAGATGACTTGATTCAAATTTATTCAGATATGTCAGAAAACTTTGCGTTTAGGAAGGACCAAGGTTTCAGATGTTTGATAAAGTCCCAAATGGAGATGGAGAAGTATAATACACAATGTCTTTGGAAGGAAAACGGCTATCCATCTCCTCTATTACTAAAACTAATGAGGGACATTGTTTCTGGGGTTGTTCATTTGCATGAATTGGGAATGATACATCGGGATTTGAAACCACAAAATGTTCTTATAATCAAGGAAAGATCTTTGTGTGCAAAGCTTTCTGATATGGGGATTAGCAAATGTCTTCTTGAAAATATGTCTTCTTTGGGTAATAATGCTACTGGTGGTGGCAGTTCAGGTTGGCAGGCACCAGAACAACTTGTTCGAGGACGTCAAACCCGGGCAGTAGATATATTTAGTTTAGGTTGTGTCCTTTTTTTCTGCATTACTGGAGGAAGACATCCATTTGGAGAACGTATTGAACGGGATATCAATATTTTGAAAAATCAAATGGATCTTTTCTTATTGGAGTTCATTCCTGAAGCCAAAGATCTTATTAGTTGTTTATTAAACCCTAACCCTGATCTAAGGCCAAAGGCGACTGAAGTATTGTACCATCCTTTTTTCTGGAGTTCCGAGATGAGACTTTCCTTTTTACGTGACACCAGTGACAGGGTGGAACTGGAGAATAGAGAGACAAATTCTGATCTTTTGGTGACATTAGAAAGCGTTGCTACAGTGGCCTTGGGTGGAAAATGGGATGAAAGGATGGAACCAACTTTCATTGCTAACATCGGTCATTACCGGCGGTACAATTTTAACAGTGTTCGAGACTTGTTGCGAGTTATGAGAAACAAACTAAATCATTATAGAGAATTGCCTCGAGAAATCCAGGAACTTGTAGGACCTGTTCCTGAAGGATTCTTCAACTACTTTGCAAGTCGATACCCAAGACTCTTGATTGAAGTGTATAAAGTTATACTCCAATACTGCAAGGAGGAAGAATGTTTCCAAAGATATTTTAAAAATGTTGATTAG
>Glyma09g32970.2 sequence type=predicted peptide gene model=Glyma09g32970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKFLPFLISFLFASLIATSGTPHPNEERLNIHSALHHRPASRSLLSLPPKAATTALIVTLDGTMYLVDQLESGSTRVIWSFSTGLPIYQSYQAPTKKDNGKENASAALMSGFMECGEGNDWSLYMHDKHFGKMRISESIAEYVARTPTFSDDGAVTLGSKRSTLFEVDAKSGSIIKIHAMSDFDNASAPCSDGKQGVTNILNVKNKDLADPMKLNSPQPLLKIFRTDYSLKSVGPSSGMVLWTMAVAEFEAVLLCQHTSFDLEDEYASDSSLNFRMPYPCQEINQVFRLKKNFRFEPSLTERLLVDYHENDMLSMPNSKLMLPSQPNIDRLFNGHDDNMMLPQPPVEITTPGEVYLNRTSEWPTPLPLILFTVFLLAFSLIYPLVIENQDILKDQDSESELKGSPAKKKKTRKSGKKNGTIDTREKHLSPENEDVLTQKDNEREVWKHFNQGDESVDGRRIGKLFVSNKEIAKGSNGTIVLEGIYECRVVAVKRLVKSHHDVAYKEIQNLIVSDHHPNIVRWHGVEYDSDFVYLALERCTCNLDDLIQIYSDMSENFAFRKDQGFRCLIKSQMEMEKYNTQCLWKENGYPSPLLLKLMRDIVSGVVHLHELGMIHRDLKPQNVLIIKERSLCAKLSDMGISKCLLENMSSLGNNATGGGSSGWQAPEQLVRGRQTRAVDIFSLGCVLFFCITGGRHPFGERIERDINILKNQMDLFLLEFIPEAKDLISCLLNPNPDLRPKATEVLYHPFFWSSEMRLSFLRDTSDRVELENRETNSDLLVTLESVATVALGGKWDERMEPTFIANIGHYRRYNFNSVRDLLRVMRNKLNHYRELPREIQELVGPVPEGFFNYFASRYPRLLIEVYKVILQYCKEEECFQRYFKNVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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