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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65950 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Euka | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR14374 | Panther | FOIE GRAS | JGI | ISS | |
| PF07919 | PFAM | Protein of unknown function (DUF1683) | JGI | ISS | |
| PF11817 | PFAM | Foie gras liver health family 1 | JGI | ISS | |
| UniRef100_D7MNH8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MNH8_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339181 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339181 related cluster n=1 Tax=unknown RepID=UPI0002339181 | SoyBase | E_val: 0 | ISS |
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Glyma09g32860 not represented in the dataset |
Glyma09g32860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g21605 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g196100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g32860.1 sequence type=CDS gene model=Glyma09g32860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAGTACCCGGAAGAGTTGCGCACTCCGCCGGTGACGCTAGCGTCTCTGGTGGGGTGCCCGGAGCTCCACCCTCTGATCTCCACCCACTTCCTATCGGCGCAGCCTCCCATCAACACCCTCGCCCTCCCCGATTTCTCCAAAATCAACCTCTTCAACAACAAGAAGAAAAACACAGACCCCTCTGATTCAACTGCTGCCACCTCACCCTCCCCCATCATCGCCGCCGGCATTCTCAAACGCGATTGGCTGCTCAAACACCGCACCAAACTCCCCTCCGTCCTCGCCGCCCTCTTCCCCTCCCACCACCTCCTCGGCGACCCAGCCCACTGGCTCCAACTATGCTCCGATCTTGATTCCATCAAGACTGTGATCCGCGGGAGGAACATCAAGTTCGCGGTGGTTGTCGTCGTTCAGAACAATGCGGATGAGATCAGCGAAGATAGAATGATTGCCTTGCGGAAGCGAGCGGAAGTGGATGCCAAACACGTCGTCGTTTTGAACCCGAACGACACTGCGGATCTCAAACAGTCTCTTCACAGGCTGGCGAGTACGTTTTCTGAATTGGCTGGCACGTATTATAGAGAAGAAGGGAGGAGGATTAAGCAGCGGATTGAGAAGAAGAATGTTAGCTCGGTTGAGTTGATTGTTCGCTACTGCTTCAAAGTTGCTGTATATGCAGAATTCCGAAGTGACTGGACTGAAGCACTGAAATTTTATGAGGAGGCCTATCATACACTGCGAGAGATTGTTGGGGTGACAACAAGGTTGCCAGCAGTGCAACGCTTAGTTGAGATAAAATCCATATCTGAACATTTGCATTTCAAAATATCAACCTTGTTACTGCACAGTGGGAAGGTTATGGAAGCAGTGACGTGGTTTCGCCAGCACAAGAATGCATATAAAAGGCTTGTTGGTGCACCAGATGGAATATTTCTTCACTGGGAGTGGATGAGTAGGCAGTTTTTGGTATTCGGTGAATTGTTGGAGACAAGTTCAAAAATAACTCAAGGCATTTCACCTATTGTCCTAGGCAATTCATCCAAACCTCTGTCCGAGTGGGAATATTATTCTGCTTATTACTACCAATTAGCAGCTCACTACTTGAGTGAGAAGAGATCAGCACTGGAACTTGCAATCTCAATGTCAGAAACTTCCGATGAGATTGATAATGTTGCTGATTCAGTAGTTCCTTCAGTGTATGTGGGCCAATTTGCCCGATTACTTGAGCAAGGAGATGATGTTGATATGCTACCTCTCACTGATGAAGAATTCATCTGCTACGCCGTTTCTGAAGGAAAAAGGTTCCGAGATTCACTTGAAATTATTGCTCTACTTAAAAAAGCTTATGAATCCTACAACAGTATGAATATTCAGAGGATGAGCTCTTTTTGTGGATTCCAGATGTCCAGAGAATATTTTGCTGAAGGTGATATCAGTAATGCAAAAAAGACTTTTGATAGTATAGCTAGCCTATACAGAAAAGAGGGATGGGTAACTTTATTATGGGATGTCTTGGGATATTTGCGAGAATGCGCCAGGAAAAATGGTACTATTAAAGATTTTGTGGAGTATTCCCTTGAAATGGCTGCGCTGCCAATATCATCTGATACTGGTGTCCAGAGAGACATTGGTCCAGCTGGTCCTGCAAATCTACTGCAAAGAGAAATTGTACAGAATGAGGTTTTTGAGCTTGTCAGTGGAGCTTCAGGAAAGGAAACAAATGAACACCCCGGTAATCTCAAGATCATGGGAGATGAATCACTTCAACTTGAGGTTGATCTTGTTAGTCCTCTTAGGTTGGTGATGCTTGCTTCAGTTGCTTTCCACGAACAGACAATCAAGCCTGGGGCATCAACTTTGATTACAGTATCACTTCTTTCCCACTTACCCCATACTGTTGAGATTGATCGATTAGAAATCCAGTTCAACCAATCTAATTGTAATTTCTTCATTACAAATGCCCAAAAACCTCAATCAGTAGAAGTTAGTAATGGAATTCAACAGCATCGAACCGAGGCAGAACCTTCTCTTTCACTTGAATCAAACAAATGGCTAAGGTTGACCTATGACATCCAATCTGATCAAAGTGGAAAACTTGAATGCCTATCTGTTATTGCAAAAATTGGATCACACTTGGCAATCTGCTGCAGAGCTGAAAGCCCTGCTTCACTGGATAGTTTACCTCTTTGGACATTGGAGGATCATGTACAAACTGTACCAATAAATGATCCAATACTCGTGTTATCTGGTCAGAAGTCCACCCAAGTTTTGGAACCAGATCCACAGGTGGATCTGCATCTTGGTGCCTCTGGTCCTGCACTAGTGGGAGAAGTTTTCTTGGTACCTGTAACATTGGTCTCCAAAGGACATGATGTCTACTCAGGTGAATTGAAGATCAATCTTGTGGATGTGAAGGGGGGTGGCTTGTTTAGTCCAAGAGACTCTGAGCCATATGCTCTGGATAGTCATCATGTCCAGTTGCTTGGTATATCTGGACCAGAAGGAGAAGATGATTCTCAATTAGATTCTGACAAAATAAAGAAAATACAGCAATCATTTGGATTAATTTCCGTTCCCATTCTTAAAAATGGAGCTTCCTGGTCATGCAAATTAGAAATCAAGTGGTACCGACCTAAACCTATTATGCTATATGTATCTTTGGGTTATACTCCATTTAGTACCGAATTAAATGCACAGATGGTCCACGTACACAAGAATTTGCAAATTGAAGGGCTCACTGCTATTGTTCTTAAGCACCATTATTTGATGCCATTCAGACGAGACCCATTGTTACTCTCTAAGAACAAGCAAGCCTCAGAGTCTGATCAGTCAGAATCACTGCCCTTGAATCAAACAAATGTGCTCATTGTTAGTGCAAAGAACAGCACTGAGTTGCCATTGAGGATAAAATCCATTTCCATAGAAGTAGAGGATGATGATGAAAGGGTGTGCTCCATTCAACATGGAACTGAGGAGCTTTCAAACCCCTCACTTCTTGTTCCTGGGGAGGAGTTCAAGAAGGTATTCTCAGTAGGTTCTGATATGAACATTTCCAAGCTCAAACTAGGAACCGTGTGTTTGAGATGGAGAAGAGACTTTGGGGTTGAAGAGCAATCTGCTTCTACTTCAACATTGCCTTGGGTTGTGACTAAACAAAATCTGCCAGATGTGAACGTGGAGTCACCTCCATTGATTGTGAGTTTTGAATGCCCCCCTTATGCCATCGTGGGAGATCCCTTCACGTATAATATTAGAATTTCAAACCAAACACAATTGCTGCAAGAAATCAAATACTCACTTGCGGACGCACAGAGTTTTGTATTGTCTGGGTATCATAATGACACAATATATGTTCTTCCAAAATCTGAGCACATTCTCAGCTACAAACTTGTCCCACTTGTCTCAGACATGCAACAGTTACCTAAATTTTCCATGACTTCAGTGAGATACTCAGCAGCATATCAGCCTTCAAATTCTTCAAACTCTGTTTTTGTTTTCCCTTCCAAGCCTCATTTCAAGGCTGCAGTCTCAACTAACTCTAGGGTGGAGTCAGTTGCTAATGAATAG
>Glyma09g32860.1 sequence type=predicted peptide gene model=Glyma09g32860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEYPEELRTPPVTLASLVGCPELHPLISTHFLSAQPPINTLALPDFSKINLFNNKKKNTDPSDSTAATSPSPIIAAGILKRDWLLKHRTKLPSVLAALFPSHHLLGDPAHWLQLCSDLDSIKTVIRGRNIKFAVVVVVQNNADEISEDRMIALRKRAEVDAKHVVVLNPNDTADLKQSLHRLASTFSELAGTYYREEGRRIKQRIEKKNVSSVELIVRYCFKVAVYAEFRSDWTEALKFYEEAYHTLREIVGVTTRLPAVQRLVEIKSISEHLHFKISTLLLHSGKVMEAVTWFRQHKNAYKRLVGAPDGIFLHWEWMSRQFLVFGELLETSSKITQGISPIVLGNSSKPLSEWEYYSAYYYQLAAHYLSEKRSALELAISMSETSDEIDNVADSVVPSVYVGQFARLLEQGDDVDMLPLTDEEFICYAVSEGKRFRDSLEIIALLKKAYESYNSMNIQRMSSFCGFQMSREYFAEGDISNAKKTFDSIASLYRKEGWVTLLWDVLGYLRECARKNGTIKDFVEYSLEMAALPISSDTGVQRDIGPAGPANLLQREIVQNEVFELVSGASGKETNEHPGNLKIMGDESLQLEVDLVSPLRLVMLASVAFHEQTIKPGASTLITVSLLSHLPHTVEIDRLEIQFNQSNCNFFITNAQKPQSVEVSNGIQQHRTEAEPSLSLESNKWLRLTYDIQSDQSGKLECLSVIAKIGSHLAICCRAESPASLDSLPLWTLEDHVQTVPINDPILVLSGQKSTQVLEPDPQVDLHLGASGPALVGEVFLVPVTLVSKGHDVYSGELKINLVDVKGGGLFSPRDSEPYALDSHHVQLLGISGPEGEDDSQLDSDKIKKIQQSFGLISVPILKNGASWSCKLEIKWYRPKPIMLYVSLGYTPFSTELNAQMVHVHKNLQIEGLTAIVLKHHYLMPFRRDPLLLSKNKQASESDQSESLPLNQTNVLIVSAKNSTELPLRIKSISIEVEDDDERVCSIQHGTEELSNPSLLVPGEEFKKVFSVGSDMNISKLKLGTVCLRWRRDFGVEEQSASTSTLPWVVTKQNLPDVNVESPPLIVSFECPPYAIVGDPFTYNIRISNQTQLLQEIKYSLADAQSFVLSGYHNDTIYVLPKSEHILSYKLVPLVSDMQQLPKFSMTSVRYSAAYQPSNSSNSVFVFPSKPHFKAAVSTNSRVESVANE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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