SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G20925 | AT | Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein | chr1:7289973-7292507 FORWARD LENGTH=472 | SoyBase | E_val: 3.00E-155 | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0009672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: auxin:hydrogen symporter activity | SoyBase | N/A | ISS |
| KOG2722 | KOG | Predicted membrane protein | JGI | ISS | |
| PF03547 | PFAM | Membrane transport protein | JGI | ISS | |
| UniRef100_G7K2M6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux carrier protein n=1 Tax=Medicago truncatula RepID=G7K2M6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233917E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233917E related cluster n=1 Tax=unknown RepID=UPI000233917E | SoyBase | E_val: 0 | ISS |
|
Glyma09g32810 not represented in the dataset |
Glyma09g32810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g21930 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g195600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g32810.1 sequence type=CDS gene model=Glyma09g32810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTTTATAAAGCTGTTTTCTGTTGCCTCTTTCCCGGTTATCAAGGTCTTATTGATTACTGCACTTGGCTTGTTTCTTGCACTGGATAACATATCAATATTGGGAGAAGATGCAAGGAAGAAAGTGAATCAGCTTGTGTTTTATGTGTTTAATCCATCGCTGGTGGGTAGCAATCTGGCCAAAACCATTACTTTTGAGAGTGTTGTTAAGTTGTGGTTCATGCCGGTGAATATTCTTGGAACATTCATATTAGGCTCGGCCTTGGGATGGATTTTGATTAAGATGACAAGGCCTCCCAAACGCATGGAAGGTCTAATCTTGGGTTGTTGTTCTGCTGGAAATTTAGGGAACCTGCCTATGATCATTATTGCAGCTATATGTAAACAGGAAGGCAGCCCTTTTGGAGAACCTGATCTCTGCAATCAATATGGGATGGCTTATGCTGCACTTTCTATGGCGATTGGAGCAGTTTTTCTATGGTCATATGTTTACAACTTAATGCGGATTTCCTCAAGTAGAATCCAAAATGAAGACCGTACAAGCAATGACAGCAGCATGTTGAAGGCTTCAGCAGACATATCAGTTTCACACCCACACAATTTTTCAAAAACACTTAATACTACAAAAGGCACCGTGGATAATGCATATACCATACTGCTACCTGAAACAAATTCGGAGGAAAAAGTTTCATTCCCAAGTAAAATTAAGCACTACGTTAGGATGATCTCAAGCCACTTAAATTTCAAATCCATGTTTGCGCCATCAACCCTCGGAGCAATTGCTGGTTTTATCATTGGTGTAGTCCCCCAAATACGTAATTTCATGATAGGCAATAATGCCCCGCTTCATGTGGTCGAAGACTCAGCTTCCATGTTAGGTGAGGCAGCCATCCCTACTGTCACTCTAATAATGGGTGCAAACCTACTTAAAGGTTTGAAAGGAACAACTGCTCCAGTGTGGACCATTGTGGGAATTGTAGTGGTCAGATATATTTTCCTGCCTCTTTTGGGTATTGCAGTTGTCAAAGGTGCTATGCACTTGAGTTTGGTGCATTCAGATGCCTTGTATCAGTTTGTGCTTCTACTTCAATATGCACTTCCACCAGCCATGAATATAGGCACTATTGCTCAATTGTTCGGATCTGGTGAAAGTGAATGTTCTGTTATCATGCTATGGACATATGCTTTAGCATCTATTGCAGTTACCCTTTGGTCAACTTTCTTCATGTGGCTAGTGTCTTGA
>Glyma09g32810.1 sequence type=predicted peptide gene model=Glyma09g32810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFIKLFSVASFPVIKVLLITALGLFLALDNISILGEDARKKVNQLVFYVFNPSLVGSNLAKTITFESVVKLWFMPVNILGTFILGSALGWILIKMTRPPKRMEGLILGCCSAGNLGNLPMIIIAAICKQEGSPFGEPDLCNQYGMAYAALSMAIGAVFLWSYVYNLMRISSSRIQNEDRTSNDSSMLKASADISVSHPHNFSKTLNTTKGTVDNAYTILLPETNSEEKVSFPSKIKHYVRMISSHLNFKSMFAPSTLGAIAGFIIGVVPQIRNFMIGNNAPLHVVEDSASMLGEAAIPTVTLIMGANLLKGLKGTTAPVWTIVGIVVVRYIFLPLLGIAVVKGAMHLSLVHSDALYQFVLLLQYALPPAMNIGTIAQLFGSGESECSVIMLWTYALASIAVTLWSTFFMWLVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
