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Report for Sequence Feature Glyma09g32650

Feature Type:gene_model
Chromosome:Gm09
Start:39152954
stop:39156642
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67280AT Annotation by Michelle Graham. TAIR10: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350 SoyBaseE_val: 7.00E-179ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0004462GO-mf Annotation by Michelle Graham. GO Molecular Function: lactoylglutathione lyase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG2943 KOG Predicted glyoxalase JGI ISS
PTHR10374Panther LACTOYLGLUTATHIONE LYASE JGI ISS
PTHR10374:SF0Panther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) JGI ISS
PF00903PFAM Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JGI ISS
UniRef100_G7KPV1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lactoylglutathione lyase n=1 Tax=Medicago truncatula RepID=G7KPV1_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339161UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339161 related cluster n=1 Tax=unknown RepID=UPI0002339161 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma01g34800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g193800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g32650.1   sequence type=CDS   gene model=Glyma09g32650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCAATTCGTCCCTCACTTTCTTCCTTCATGTTACCCTCCCTCCGCTCTTGCAACCCTTCTGAAAAGCTCTCTCTTTTTCATCTCGGTAGCGGTATTAGACTGTATCATAAGTTTGGCCTGAAATCTTCTAGGCTTTTAAGACATGATGATAATAAGTGCATGAGAGTGATGGCATCTGGGAACATGTCCACAGCTGCTACACAGGAAAATGTGCTCGATTGGGTCAAACATGACAAGAGAAGAATGCTTCATGTTGTGTATCGTGTTGGGGACTTGGACAAGAGCATAAAATTTTATAGAGAGTGCCTTGGAATGAAGTTGCTCAGAAAGCGCGACATGCAAGAACAGAGATATACTAATGCCTTTCTTGGATATGGCCCTGAGGATGCACACTTTGTTGCTGAACTGACATACAATTATGGGATTGATAAGTATGACATTGGAGATGGATTTGGCCATTTTGGTCTTGCTGTTGATGATATTTCAAGAATAGTGGAACTTGTTAGAGCCAAGGGAGGGAAAATTACTAGAGAGCCTAGTCCTGTCAAGGGAGGCAACTCAACAATTGCATATATTGAAGATCCTGATGGTTATCAATTTGAACTTTCCGAAAGGGTTTCCTCTCCTGAGCCTTTGAGCAAAGTAATGCTTCGAGTGGGTGATCTTGATCGTTCCATTAAATTTTATGAGAAGGCTTTTGGTATGGAGCTACTTCGAACACAAGATGATCCAGAGTCTAAGAGTACAATAGCAATACTGGGTTATGGTCCAGAGGAAAAAAACACTGTCCTGGAATTGACTTACAACTATGGAGTCACAGATTATGATAAAGGAGATGCTTATGCTCAGATTACAATAGGCACAGATGATGTGTACAAAACTGCAGAAGCAATCAAACTTGCAGGAGGGAAGATTACTCGGGAACCTGGACCTGTACCTGGTATCAAAACGAAGATCACATTGTGTGTTGATCCTGATGGTTGGAAAACTGTTTTTGTAGATAATGTTGACTTTCGTAGGGAGTTGGAATAG

>Glyma09g32650.1   sequence type=predicted peptide   gene model=Glyma09g32650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIRPSLSSFMLPSLRSCNPSEKLSLFHLGSGIRLYHKFGLKSSRLLRHDDNKCMRVMASGNMSTAATQENVLDWVKHDKRRMLHVVYRVGDLDKSIKFYRECLGMKLLRKRDMQEQRYTNAFLGYGPEDAHFVAELTYNYGIDKYDIGDGFGHFGLAVDDISRIVELVRAKGGKITREPSPVKGGNSTIAYIEDPDGYQFELSERVSSPEPLSKVMLRVGDLDRSIKFYEKAFGMELLRTQDDPESKSTIAILGYGPEEKNTVLELTYNYGVTDYDKGDAYAQITIGTDDVYKTAEAIKLAGGKITREPGPVPGIKTKITLCVDPDGWKTVFVDNVDFRRELE*







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