SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G29060 | AT | Annotation by Michelle Graham. TAIR10: elongation factor Ts family protein | chr4:14317744-14321315 FORWARD LENGTH=953 | SoyBase | E_val: 0 | ISS |
| GO:0006414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational elongation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity | SoyBase | N/A | ISS |
| KOG1071 | KOG | Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt | JGI | ISS | |
| PTHR11741 | Panther | ELONGATION FACTOR TS | JGI | ISS | |
| PF00575 | PFAM | S1 RNA binding domain | JGI | ISS | |
| PF00627 | PFAM | UBA/TS-N domain | JGI | ISS | |
| PF00889 | PFAM | Elongation factor TS | JGI | ISS | |
| UniRef100_I1L4K9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor Ts n=1 Tax=Glycine max RepID=I1L4K9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L4K9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Elongation factor Ts n=1 Tax=Glycine max RepID=I1L4K9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g32600 not represented in the dataset |
Glyma09g32600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g34700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g193300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g32600.1 sequence type=CDS gene model=Glyma09g32600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCCTGTAATACCATGCTCTATTGGCAATGTTTCAATTATTCCTGGATTCACCTATTCAACAAGGAAGAATAACACTTTAACAAGATTGAACTTGTCAAGGAGCACTGTAAAACCTGGATCATCATCTTGGAGATTTCTATTACCTTCATTTGTTGCCAGTGGAGCATTTCCACAAAACAAAAGGATACTCTCTTTTCATAAGAAGTCTAGAACCTCCATATCAGCCACAGAAACAGATGTAGCAGTGGAGGAACCAGGTCCTGTTGCTGATGAAGATTCTGGTGAACTTCCTTCAAATGAAGTTGGAGTAAGTGAAGATTCATTTACTAAGTCTGATGCCAACCCTGATCCAGCTAAAGCCAGACGTTCAAGACCTGCAAGGAAAAGTGAGATGCCTCCTGTAAAGAATGAGGATTTGTTACCTGGGGCAACTTTTACTGGGAAAGTGAAATCTGTCCAGCCATTTGGTGCCTTCGTTGATATTGGTGCTTTCACAGATGGGCTTGTTCATATTTCAATGTTGAGTGATAGCTATGTTAAGGATGTTGCAAGTGTTGTTTCTGTAGGCCAAGAAGTGAAGGTGAAGCTGATTGAAGTGAATACGGAAACTCAGCGTATTTCTCTCTCTATGCGTGAAAATGTTGACACTGGTAAGCAGCGTAAAGATGCACCCACCAAGACAGAGAAAGCTGGACCTGGGAAGAGGAACAATTCAAAACCCAGTCCAAAGAAAGATAATGTGACGAAAAGCACAAAATTTGCCATTGGGCAGCAACTGGTTGGTTCAGTGAAGAATTTGGCTAGGAGTGGTGCTTTTATATCACTTCCTGAAGGGGAGGAAGGATTTCTACCTGTATCTGAGGAACCTGATGATGGATTTGATAATGTTATGGGGAACACTACGCTGGAGGTCGGTCAAGAAGTTAATGTACGAGTTTTGCGTATCACAAGAGGACAAGTAACATTGACTATGAAGAAGGAGGAAGATACTGCAGGATTGGACTCAACATTTAACCAAGGGGTTGTCCATGTTGCAACAAACCCTTTTGTGGTGGCTTTTCGTAAGAATAAGGATATTGCTTCTTTTTTGGATGATAGGGAGAAAACTCAGACTGAGGTTCTAAAACCATCCACTGCTAGTACTTTGGAAGAAATTAAGGGAACTGTCAATCAAGGGGAAACTGTATTGGATGTTCCTGACGTGCAGGGGGAACCAGAAAGCAGCAAGTTGACAGATGATGTTCCTTCTGCTGAAGATGATATTTCTGAAAATGTGGGAACCAGTGCAACTAATGGCTCGTCAACAGCTATTGTGGATGATGAAAGTAACCTAGTCAGCAATGTTTCTAGCCCAAAGACAGGTATAGATAGTGCCATTGAGAAGGAAGAAGAGGTAGCTTTTGGAAGTTTAATTCCTGAAGAGGATCTATCTACTGTAAATCCAATAATTGAGGAAGCTACTCAGACAGATGTCACAACAATCGATTTGAAAACTGACGCACCTGTTGAAATAGCTAATGAAAATGTAATAGAAACTGGAGTTGATCAAATTGTTGCAGAAGATGAGAAACAATCACAAACTCCTAATGCAATGGAAGAGTTTGCAGCTGCAGTACTAACAGACAGTGATGTGGTCGAACCTAGCCCTGATAAAAATGATGCAATTACAGAATCAGATATTACATCGAGTGCACCAGCTCCCCAAGAAAGTGCAGGTGATGATGTTGGAGCTATTACTGAGAACATTGACAGCGATACTAGTTTGAGTGGACAAAGTGACGAGTTGTCTCCTGAGGGAAGCTTGACTACAGATGCAACAGAAGAAACTGATCAGGTTCCTTCTCCTGAAAGTTCTGCCACTGAAGTAGTAAAAACCTCCATTGATGATCCTGAAGAAGAAGCAAAAAAACAAACTCCGGCTACAGAGAATGAAAATTCTTTTACCTCACAAGTTGAAGACAAAGAGGTTGCAATTGCATCTGATAAAAATAGCAGTTTATCTAATTCTGATGGACAAACTGGTGCTACTTCAGGAGAAAGCTTGAGTAAAGCAACTATATCACCAGCACTTGTGAAGCAACTTCGGGAAGAAACAGGAGCTGGAATGATGGACTGCAAAAATGCACTATCAGAGACCGGTGGGGACATTATTAAAGCACAAGAGTACCTTAGGAAGAAAGGCTTATCAAGTGCAGACAAGAAAGCAAGCAGGGTAACTGCTGAAGGAAGGATCGGTTCTTACATCCATGACAGCAGGATAGGTGTTTTGGTAGAAGTAAACTGTGAGACAGATTTTGTCTCACGAGGTGAAATTTTTAAAGAGCTTGTCGATGATATAGCCATGCAAGTGGCTGCATGCCCTCAAGTAGAGTTTCTTGTTACTGAAGATGTTCCCGAGGAAATTGTGAACAAAGAAAAAGAGATAGAAATGCAGAAAGAAGATCTTTTGTCAAAACCAGAGCAGATAAGATCAAAGATTGTTGAAGGGCGGATAAGAAAAAGACTTGAGGAGCTGGCATTGCTTGAGCAGTCCTACATTAAGGATGATAAGGTAGCAGTAAAGGACTTCGTCAAGCAAACTATTGCAACTATTGGAGAAAATATTAAAGTTAAGAGGTTTGTGCGGTTCAACCTTGGAGAAGGTTTAGAGAAGAAAAGCCAGGATTTTGCTGCTGAAGTAGCGGCACAAACTGCAGCAAAACCAGCACCTATACTGGTGAAAGAGGAGCCTGCTGTTGCAGATGCAGAAGCCAAGGAGACCGAGCCAAAGCAAATAACAGTTGCAGTCTCAGCCTCATTGGTTAAGCAACTGAGGGAAGAAACTGGAGCAGGGATGATGGACTGTAAGAAAGCTCTAGCTGAAACTGGAGGGGACCTGGAAAAGGCCCAAGAATACCTCAGAAAAAAGGGTCTCTCATCTGCTGACAAAAAATCCAGCAGGCTAGCAGCCGAAGGCAGAATTGGTTCATACATTCACGATTCACGCATTGGCGTTCTAATTGAAGTGAACTGTGAAACTGACTTTGTTGGTAGAGGTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTGTAGCCTGCCCACAGGTGCAGTTTGTATCCATTGAAGATATTCCAGAGACTATTGTGAACAAAGAAAAGGAACTTGAAATGCAGAGAGAGGACCTGCTTTCGAAACCAGAGAACATCAGAGAAAAAATTGTTGAGGGAAGGATCTCAAAGAGGCTTGGGGAGCTTGCTCTTCTAGAGCAGCCTTTTATTAAGGATGACAGTGTTTTAGTGAAAGACTTGGTGAAGCAAACTGTAGCTGCACTCGGAGAGAACATTAAAGTGCGCCGTTTTGTTCGGTTTACGCTTGGGGAGACATCTGAAAAAGAAACAACAGTACCAGCATAA
>Glyma09g32600.1 sequence type=predicted peptide gene model=Glyma09g32600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPVIPCSIGNVSIIPGFTYSTRKNNTLTRLNLSRSTVKPGSSSWRFLLPSFVASGAFPQNKRILSFHKKSRTSISATETDVAVEEPGPVADEDSGELPSNEVGVSEDSFTKSDANPDPAKARRSRPARKSEMPPVKNEDLLPGATFTGKVKSVQPFGAFVDIGAFTDGLVHISMLSDSYVKDVASVVSVGQEVKVKLIEVNTETQRISLSMRENVDTGKQRKDAPTKTEKAGPGKRNNSKPSPKKDNVTKSTKFAIGQQLVGSVKNLARSGAFISLPEGEEGFLPVSEEPDDGFDNVMGNTTLEVGQEVNVRVLRITRGQVTLTMKKEEDTAGLDSTFNQGVVHVATNPFVVAFRKNKDIASFLDDREKTQTEVLKPSTASTLEEIKGTVNQGETVLDVPDVQGEPESSKLTDDVPSAEDDISENVGTSATNGSSTAIVDDESNLVSNVSSPKTGIDSAIEKEEEVAFGSLIPEEDLSTVNPIIEEATQTDVTTIDLKTDAPVEIANENVIETGVDQIVAEDEKQSQTPNAMEEFAAAVLTDSDVVEPSPDKNDAITESDITSSAPAPQESAGDDVGAITENIDSDTSLSGQSDELSPEGSLTTDATEETDQVPSPESSATEVVKTSIDDPEEEAKKQTPATENENSFTSQVEDKEVAIASDKNSSLSNSDGQTGATSGESLSKATISPALVKQLREETGAGMMDCKNALSETGGDIIKAQEYLRKKGLSSADKKASRVTAEGRIGSYIHDSRIGVLVEVNCETDFVSRGEIFKELVDDIAMQVAACPQVEFLVTEDVPEEIVNKEKEIEMQKEDLLSKPEQIRSKIVEGRIRKRLEELALLEQSYIKDDKVAVKDFVKQTIATIGENIKVKRFVRFNLGEGLEKKSQDFAAEVAAQTAAKPAPILVKEEPAVADAEAKETEPKQITVAVSASLVKQLREETGAGMMDCKKALAETGGDLEKAQEYLRKKGLSSADKKSSRLAAEGRIGSYIHDSRIGVLIEVNCETDFVGRGEKFKELVDDLAMQVVACPQVQFVSIEDIPETIVNKEKELEMQREDLLSKPENIREKIVEGRISKRLGELALLEQPFIKDDSVLVKDLVKQTVAALGENIKVRRFVRFTLGETSEKETTVPA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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