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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G28950 | AT | Annotation by Michelle Graham. TAIR10: RHO-related protein from plants 9 | chr4:14278289-14279705 FORWARD LENGTH=209 | SoyBase | E_val: 4.00E-138 | ISS |
| GO:0006184 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GTP catabolic process | SoyBase | N/A | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0007264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0393 | KOG | Ras-related small GTPase, Rho type | JGI | ISS | |
| PTHR24072 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24072:SF352 | Panther | JGI | ISS | ||
| PF00071 | PFAM | Ras family | JGI | ISS | |
| UniRef100_A7UQU4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ROP-like protein n=1 Tax=Medicago truncatula RepID=A7UQU4_MEDTR | SoyBase | E_val: 6.00E-144 | ISS |
| UniRef100_UPI0001B63622 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001B63622 related cluster n=1 Tax=unknown RepID=UPI0001B63622 | SoyBase | E_val: 1.00E-156 | ISS |
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Glyma09g32530 not represented in the dataset |
Glyma09g32530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g09250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g192700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g32530.2 sequence type=transcript gene model=Glyma09g32530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCAGCAACGAACACCATTTAACTAAACTATAGTACTATAATATGCATTGCATTTGAGCTCAAGTCATTTTTTTTCCTCTCACTCACTAGTATTTTTTATGTCTTGTTTCTTGAAACTACAAGAAGGGTCTTTTCTCTTTTTCTATTTATCTCATCTCACACCCTTTAATGTAACCTAGAGAGAATCAAAATAATACCACTTTCTTAGTTTCAAACTCAACTTTTGAGGGTCTTTTCTCTATTAAAAACACACAAGAGTTTTAGTCTTTTAGCTAACAGTGTTCATATGATGAATGCTTCAAAGTTCATTAAATGTGTTACTGTTGGAGATGGAGCTGTTGGGAAAACCTGCATGCTCATTTGCTACACCAGCAACAAGTTCCCCACTGTAAGTCCCTCAAAAAAATAATAAGACCCCATCCATCAAAGATGCTTCTTTTATCCATTAAGCTCCCTTGTTTTCATTTTTTGAAATTTGGAGGTATTTCATCTGAATGGATTACATACCAACAGTATTTGACAATTTCAGTGCCAATGTAGCTGTGGATGGAAGCATTGTCAATTTGGGGCTATGGGACACAGCAGGCCAGGAAGACTATAGCAGGTTGAGGCCACTGAGCTATAGAGGAGCAGACATTTTTGTCTTAGCATTCTCACTGATTAGCAGAGCTAGCTATGAAAATGTTCTCAAGAAGTGGATGCCGGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGATCTTCGTGAAGACCGGGGTTATGTAGCTGATCACATGGGATCTAATGTCATAACATCTGCTGAGGGGGAAGAACTGAGGAAACAAATTGGTGCAGCAGCTTACATTGAGTGCAGTTCAAAGACTCAACAGAATGTCAAAGCAGTGTTTGACACTGCAATTAAGGTTGTTCTCCAACCTCAACCTCCAAGGAGGAAAGAAATGGCAAGGAAGAAAAGGCATAGAAGGTCTGGTTGCTCATTTGTAAGTATTATGTGCGGAGGCTGTGCTGCTTAATACGCACATCAATTGCACCGTCACTTACTTTTGAACTGGATGTTATTTTGCAAAAGCTTCAAGATCTAAGTGTGGAAACCCTGACATCTGATCGCATATCTAAATGTATCCTTATGCTTGTATTGTAACTTATGTAAGATGTAAGATAGTAATATCCAGTTATTTCCACTTTACATTTTACAAGACCCTATTAGACACTGAAGGGAATTTTTCATTCTCTCAGTTGTTATGTATTTATTTTATATTGCCAATTTTTGTTATTTTTTCCTTGAAATGCTTCTTCATGCCCATGCCCATGCCCTATAAAACTTTCCAGAGGATATATAATGATTTCTCAGCAGCAGCATTCCAAAATCTCAGATATCCATTTTTATAGGGAGAAAAAAAAAGTGACATGTTCTCTCTCACTAACTTAGAAAACTATGAAGAACAATTTCTCGTTCCTTGACATTTTGCATTAGAATAAAAAAGATCTTTTTCTGAGTTTGCAGTTGGTTCTGCA >Glyma09g32530.3 sequence type=transcript gene model=Glyma09g32530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCAGCAACGAACACCATTTAACTAAACTATAGTACTATAATATGCATTGCATTTGAGCTCAAGTCATTTTTTTTCCTCTCACTCACTAGTATTTTTTATGTCTTGTTTCTTGAAACTACAAGAAGGGTCTTTTCTCTTTTTCTATTTATCTCATCTCACACCCTTTAATGTAACCTAGAGAGAATCAAAATAATACCACTTTCTTAGTTTCAAACTCAACTTTTGAGGGTCTTTTCTCTATTAAAAACACACAAGAGTTTTAGTCTTTTAGCTAACAGTGTTCATATGATGAATGCTTCAAAGTTCATTAAATGTGTTACTGTTGGAGATGGAGCTGTTGGGAAAACCTGCATGCTCATTTGCTACACCAGCAACAAGTTCCCCACTGATTACATACCAACAGTATTTGACAATTTCAGTGCCAATGTAGCTGTGGATGGAAGCATTGTCAATTTGGGGCTATGGGACACAGCAGGCCAGGAAGACTATAGCAGGTTGAGGCCACTGAGCTATAGAGGAGCAGACATTTTTGTCTTAGCATTCTCACTGATTAGCAGAGCTAGCTATGAAAATGTTCTCAAGAAGTGGATGCCGGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGATCTTCGTGAAGACCGGGGTTATGTAGCTGATCACATGGGATCTAATGTCATAACATCTGCTGAGGGGGAAGAACTGAGGAAACAAATTGGTGCAGCAGCTTACATTGAGTGCAGTTCAAAGACTCAACAGAATGTCAAAGCAGTGTTTGACACTGCAATTAAGGTTGTTCTCCAACCTCAACCTCCAAGGAGGAAAGAAATGGCAAGGAAGAAAAGGCATAGAAGGTCTGGTTGCTCATTTGTTATTATGTGCGGAGGCTGTGCTGCTTAATACGCACATCAATTGCACCGTCACTTACTTTTGAACTGGATGTTATTTTGCAAAAGCTTCAAGATCTAAGTGTGGAAACCCTGACATCTGATCGCATATCTAAATGTATCCTTATGCTTGTATTGTAACTTATGTAAGATGTAAGATAGTAATATCCAGTTATTTCCACTTTACATTTTACAAGACCCTATTAGACACTGAAGGGAATTTTTCATTCTCTCAGTTGTTATGTATTTATTTTATATTGCCAATTTTTGTTATTTTTTCCTTGAAATGCTTCTTCATGCCCATGCCCATGCCCTATAAAACTTTCCAGAGGATATATAATGATTTCTCAGCAGCAGCATTCCAAAATCTCAGATATCCATTTTTATAGGGAGAAAAAAAAAGTGACATGTTCTCTCTCACTAACTTAGAAAACTATGAAGAACAATTTCTCGTTCCTTGACATTTTGCATTAGAATAAAAAAGATCTTTTTCTGAGTTTGCAGTTGGTTCTGCA
>Glyma09g32530.1 sequence type=CDS gene model=Glyma09g32530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAATGCTTCAAAGTTCATTAAATGTGTTACTGTTGGAGATGGAGCTGTTGGGAAAACCTGCATGCTCATTTGCTACACCAGCAACAAGTTCCCCACTGATTACATACCAACAGTATTTGACAATTTCAGTGCCAATGTAGCTGTGGATGGAAGCATTGTCAATTTGGGGCTATGGGACACAGCAGGCCAGGAAGACTATAGCAGGTTGAGGCCACTGAGCTATAGAGGAGCAGACATTTTTGTCTTAGCATTCTCACTGATTAGCAGAGCTAGCTATGAAAATGTTCTCAAGAAGTGGATGCCGGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGATCTTCGTGAAGACCGGGGTTATGTAGCTGATCACATGGGATCTAATGTCATAACATCTGCTGAGGGGGAAGAACTGAGGAAACAAATTGGTGCAGCAGCTTACATTGAGTGCAGTTCAAAGACTCAACAGAATGTCAAAGCAGTGTTTGACACTGCAATTAAGGTTGTTCTCCAACCTCAACCTCCAAGGAGGAAAGAAATGGCAAGGAAGAAAAGGCATAGAAGGTCTGGTTGCTCATTTGTAAGTATTATGTGCGGAGGCTGTGCTGCTTAA >Glyma09g32530.2 sequence type=CDS gene model=Glyma09g32530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTACATACCAACAGTATTTGACAATTTCAGTGCCAATGTAGCTGTGGATGGAAGCATTGTCAATTTGGGGCTATGGGACACAGCAGGCCAGGAAGACTATAGCAGGTTGAGGCCACTGAGCTATAGAGGAGCAGACATTTTTGTCTTAGCATTCTCACTGATTAGCAGAGCTAGCTATGAAAATGTTCTCAAGAAGTGGATGCCGGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGATCTTCGTGAAGACCGGGGTTATGTAGCTGATCACATGGGATCTAATGTCATAACATCTGCTGAGGGGGAAGAACTGAGGAAACAAATTGGTGCAGCAGCTTACATTGAGTGCAGTTCAAAGACTCAACAGAATGTCAAAGCAGTGTTTGACACTGCAATTAAGGTTGTTCTCCAACCTCAACCTCCAAGGAGGAAAGAAATGGCAAGGAAGAAAAGGCATAGAAGGTCTGGTTGCTCATTTGTAAGTATTATGTGCGGAGGCTGTGCTGCTTAA >Glyma09g32530.3 sequence type=CDS gene model=Glyma09g32530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAATGCTTCAAAGTTCATTAAATGTGTTACTGTTGGAGATGGAGCTGTTGGGAAAACCTGCATGCTCATTTGCTACACCAGCAACAAGTTCCCCACTGATTACATACCAACAGTATTTGACAATTTCAGTGCCAATGTAGCTGTGGATGGAAGCATTGTCAATTTGGGGCTATGGGACACAGCAGGCCAGGAAGACTATAGCAGGTTGAGGCCACTGAGCTATAGAGGAGCAGACATTTTTGTCTTAGCATTCTCACTGATTAGCAGAGCTAGCTATGAAAATGTTCTCAAGAAGTGGATGCCGGAATTGCGTAGATTTGCACCTAATGTTCCAATTGTTCTTGTTGGTACGAAGTTAGATCTTCGTGAAGACCGGGGTTATGTAGCTGATCACATGGGATCTAATGTCATAACATCTGCTGAGGGGGAAGAACTGAGGAAACAAATTGGTGCAGCAGCTTACATTGAGTGCAGTTCAAAGACTCAACAGAATGTCAAAGCAGTGTTTGACACTGCAATTAAGGTTGTTCTCCAACCTCAACCTCCAAGGAGGAAAGAAATGGCAAGGAAGAAAAGGCATAGAAGGTCTGGTTGCTCATTTGTTATTATGTGCGGAGGCTGTGCTGCTTAA
>Glyma09g32530.1 sequence type=predicted peptide gene model=Glyma09g32530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMNASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYVADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPQPPRRKEMARKKRHRRSGCSFVSIMCGGCAA* >Glyma09g32530.2 sequence type=predicted peptide gene model=Glyma09g32530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYVADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPQPPRRKEMARKKRHRRSGCSFVSIMCGGCAA* >Glyma09g32530.3 sequence type=predicted peptide gene model=Glyma09g32530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMNASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYVADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPQPPRRKEMARKKRHRRSGCSFVIMCGGCAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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