Glyma09g32430 - SoyBase

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Report for Sequence Feature Glyma09g32430

Feature Type:	gene_model
Chromosome:	Gm09
Start:	38964649
stop:	38972466
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g32430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29010	AT	Annotation by Michelle Graham. TAIR10: Enoyl-CoA hydratase/isomerase family \| chr4:14297312-14302016 REVERSE LENGTH=721	SoyBase	E_val: 0	ISS
GO:0006631	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity	SoyBase	N/A	ISS
GO:0004300	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enoyl-CoA hydratase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1683	KOG	Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase	JGI		ISS
PTHR23309	Panther	3-HYDROXYACYL-COA DEHYROGENASE	JGI		ISS
PF00378	PFAM	Enoyl-CoA hydratase/isomerase family	JGI		ISS
PF00725	PFAM	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	JGI		ISS
PF02737	PFAM	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	JGI		ISS
UniRef100_G7KPD3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal fatty acid beta-oxidation multifunctional protein n=1 Tax=Medicago truncatula RepID=G7KPD3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L4J2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L4J2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g32430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g32430 not represented in the dataset	Glyma09g32430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g32430

Paralog	Evidence	Comments
Glyma07g09370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g32430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g191700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g32430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g32430

Limit To All Plant Sequences

>Glyma09g32430.2   sequence type=transcript   gene model=Glyma09g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAGTGTGAATAACAAAAATTATGATTTCTTAATTTTCTTGATTGCGAGAGTCAGTAGCGAAATCCCCCCGAAATGATGAAGGGTCTTTCTTTACATTGATTGTCAGTTTGCCACTTTCTACTTTCCATCATCGCCTTGGGACTTATCCTTCTTAAACCCATTTCCTTCACTTCCATTTCATGCGAAAAAGCCTTACTTGATTCTTCGAAAAGGAAGGAACTTGGGACTTGTTTCTCTCAGAGATGGCGTTGCCTAAGGTTGATTTCGAGGTTGGAGCTGATGGGGTTGCTGTCATCACTATGTGCAACCCACCCGTCAATGCTTTGGCCATTCCAATTATCATGGGGTTGAAGAACAGATTTGATGAGGCAGCTAGGAGGAATGATGTGAAAGCTATAGTTTTGACTGGCAAAGGTGGGAGATTTTCTGGTGGATTTGATATCAGTGTTATGCAGAAGGTTCACCGGACTGGGGATTCCTCGCATCTCCCTGATGTCTCAGTGGAACTAGTAGTTAATTCAATTGAAGATTCGAAGAAGCCTGTTGTTGCAGCAGTAGCAGGGCTTGCTCTTGGAGGTGGCTTAGAACTGGCTATGGGATGCCATGCCCGTGTTGCGGCTCCAAGAGCTCAATTGGGTCTACCAGAGCTGACTCTTGGTATTATTCCTGGATTTGGAGGAACACAGCGTCTTCCAAGGCTTATTGGGCTGTCTAAAGCTGTTGAAATGATGCTGACATCTAAACCAATCACATCGGAAGAAGGGAGGAAATTAGGACTTATTGATGCTATTGTGTCTTCTGAGGAGTTACTAAATGCATCTAGGTTGTGGGCACTTGAAATTGGAGAGAGGTGCAAACCTTGGGTTCGTTCACTTCATAGGACGGACAAAATTGGTTCTCTGTCTGAAGCACGTGAGGTGTTGAGAACTGCCAGGCAACAAGTAAAGAAGACTGTTCCACATTTGCCTCAGCAGCTGGCTTGTGTAGATGTGATTGAACATGGAATAGTCCATGGAGGCTACAGTGGTGTTCTAAAGGAGGCAGAAGTATTCAAACAATTGGTTGTATCTGACACCGCAAAAGGTTTAATTAATGTCTTCTTTTCTCAGCGGGCGATATCAAAGGTGCCTGGCGTAACCGATATCGGCCTTAAGCCCAGAAATGTGAAAAAAGCTGCTGTTATTGGAGGAGGTCTAATGGGTTCTGGCATTGCTACAGCTCTTATACTAGGCAACATTCATGTTATACTCAAGGAAATCAATCCTGAATTTCTTCTGAAGGGAATAAAAACAATAGAAGCAAATGTTAATGGCTTAGTAAGAAGAGGAAAGTTGACGAAACAGAAGGCAGATGCTGCACTGTCACTGCTTAGAGGTGTTCTGGATTACTCAGAATTTAAAGATGTGGACTTGGTCATTGAGGCTGTAATTGAAAATATCAGTCTCAAACAAACTATATTTAGTGATCTTGAGAAGATTTGTCCTCCACACTGCATTTTAGCATCAAACACATCAACTATTGACCTTGATGTTGTTGGTAAAACGACCAGCTCTCAAAATCGCATTGCGGGTGCTCATTTTTTCAGTCCTGCCCACATTATGCCTCTTTTGGAGATTATACGAACCGATAAAACATCTGCACAAGTGATTCTTGATCTGATAACAGTTGGTAAAATCATAAAGAAGACACCTGTTGTGGTGGGTAATTGTACTGGCTTTGCAGTGAATAAAACATTCTTCCCATATTCACAAGGTGCCCATTTGTTGGTCAACTTGGGCGTGGATGTTTTCAGAATTGACACATTGATACGCAACTTTGGCTTTCCGATTGGTCCTTTCCAGCTTCAAGACTTGGCTGGCTATGGAGTTGCCGTTGCTACCTCAAAAGTATTTGCTGATGCTTTTTCTGATCGCATATTTAAATCTCCACTGCTTGATCTTCTGATCAAATCTGGGCGAAATGGCAAAAACAATGGGAAAGGGTACTACATTTATGAAAAGGCTGGCAAGCCAAAACCTGATCCTTCAATACTACCAATCATTGAGGAGTCTAGAAGACTTTGCAATATTATGCCCAATGGAAAGCCTATATCTGTTACTGACCAAGAGATCGTGGAGATGATACTCTTCCCAGTAGTTAATGAGGCATGCCGTGTTCTAGAAGATGGAGTTGTTATTCGAGCATCAGACCTTGACATTGCATCTGTTCTTGGAATGAGCTTCCCAAATTACCGGTTTGATTTCCTTTATTCACTCTTTAAAATTGACAATAACTGAGAAATGGGACCAAGGAGATAAAGCT

Coding sequences of Glyma09g32430

Limit To All Plant Sequences

>Glyma09g32430.1   sequence type=CDS   gene model=Glyma09g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTGCCTAAGGTTGATTTCGAGGTTGGAGCTGATGGGGTTGCTGTCATCACTATGTGCAACCCACCCGTCAATGCTTTGGCCATTCCAATTATCATGGGGTTGAAGAACAGATTTGATGAGGCAGCTAGGAGGAATGATGTGAAAGCTATAGTTTTGACTGGCAAAGGTGGGAGATTTTCTGGTGGATTTGATATCAGTGTTATGCAGAAGGTTCACCGGACTGGGGATTCCTCGCATCTCCCTGATGTCTCAGTGGAACTAGTAGTTAATTCAATTGAAGATTCGAAGAAGCCTGTTGTTGCAGCAGTAGCAGGGCTTGCTCTTGGAGGTGGCTTAGAACTGGCTATGGGATGCCATGCCCGTGTTGCGGCTCCAAGAGCTCAATTGGGTCTACCAGAGCTGACTCTTGGTATTATTCCTGGATTTGGAGGAACACAGCGTCTTCCAAGGCTTATTGGGCTGTCTAAAGCTGTTGAAATGATGCTGACATCTAAACCAATCACATCGGAAGAAGGGAGGAAATTAGGACTTATTGATGCTATTGTGTCTTCTGAGGAGTTACTAAATGCATCTAGGTTGTGGGCACTTGAAATTGGAGAGAGGTGCAAACCTTGGGTTCGTTCACTTCATAGGACGGACAAAATTGGTTCTCTGTCTGAAGCACGTGAGGTGTTGAGAACTGCCAGGCAACAAGTAAAGAAGACTGTTCCACATTTGCCTCAGCAGCTGGCTTGTGTAGATGTGATTGAACATGGAATAGTCCATGGAGGCTACAGTGGTGTTCTAAAGGAGGCAGAAGTATTCAAACAATTGGTTGTATCTGACACCGCAAAAGGTTTAATTAATGTCTTCTTTTCTCAGCGGGCGATATCAAAGGTGCCTGGCGTAACCGATATCGGCCTTAAGCCCAGAAATGTGAAAAAAGCTGCTGTTATTGGAGGAGGTCTAATGGGTTCTGGCATTGCTACAGCTCTTATACTAGGCAACATTCATGTTATACTCAAGGAAATCAATCCTGAATTTCTTCTGAAGGGAATAAAAACAATAGAAGCAAATGTTAATGGCTTAGTAAGAAGAGGAAAGTTGACGAAACAGAAGGCAGATGCTGCACTGTCACTGCTTAGAGGTGTTCTGGATTACTCAGAATTTAAAGATGTGGACTTGGTCATTGAGGCTGTAATTGAAAATATCAGTCTCAAACAAACTATATTTAGTGATCTTGAGAAGATTTGTCCTCCACACTGCATTTTAGCATCAAACACATCAACTATTGACCTTGATGTTGTTGGTAAAACGACCAGCTCTCAAAATCGCATTGCGGGTGCTCATTTTTTCAGTCCTGCCCACATTATGCCTCTTTTGGAGATTATACGAACCGATAAAACATCTGCACAAGTGATTCTTGATCTGATAACAGTTGGTAAAATCATAAAGAAGACACCTGTTGTGGTGGGTAATTGTACTGGCTTTGCAGTGAATAAAACATTCTTCCCATATTCACAAGGTGCCCATTTGTTGGTCAACTTGGGCGTGGATGTTTTCAGAATTGACACATTGATACGCAACTTTGGCTTTCCGATTGGTCCTTTCCAGCTTCAAGACTTGGCTGGCTATGGAGTTGCCGTTGCTACCTCAAAAGTATTTGCTGATGCTTTTTCTGATCGCATATTTAAATCTCCACTGCTTGATCTTCTGATCAAATCTGGGCGAAATGGCAAAAACAATGGGAAAGGGTACTACATTTATGAAAAGGCTGGCAAGCCAAAACCTGATCCTTCAATACTACCAATCATTGAGGAGTCTAGAAGACTTTGCAATATTATGCCCAATGGAAAGCCTATATCTGTTACTGACCAAGAGATCGTGGAGATGATACTCTTCCCAGTAGTTAATGAGGCATGCCGTGTTCTAGAAGATGGAGTTGTTATTCGAGCATCAGACCTTGACATTGCATCTGTTCTTGGAATGAGCTTCCCAAATTACCGGGGTGGCATTGTTTTCTGGGCAGACTTGGTTGGGGCCAATCATATATATACCAGCCTAAAAAAATGGGCACAATTATATGGTAACTTCTATAAACCCTCAAGGTATTTGGAAGAAAGAGCACTCAAAGGCATTCCCTTGAGTGCACCTGCTTCATCTACTCCAAAGTCAATGGCACGTCTATGA

>Glyma09g32430.2   sequence type=CDS   gene model=Glyma09g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTGCCTAAGGTTGATTTCGAGGTTGGAGCTGATGGGGTTGCTGTCATCACTATGTGCAACCCACCCGTCAATGCTTTGGCCATTCCAATTATCATGGGGTTGAAGAACAGATTTGATGAGGCAGCTAGGAGGAATGATGTGAAAGCTATAGTTTTGACTGGCAAAGGTGGGAGATTTTCTGGTGGATTTGATATCAGTGTTATGCAGAAGGTTCACCGGACTGGGGATTCCTCGCATCTCCCTGATGTCTCAGTGGAACTAGTAGTTAATTCAATTGAAGATTCGAAGAAGCCTGTTGTTGCAGCAGTAGCAGGGCTTGCTCTTGGAGGTGGCTTAGAACTGGCTATGGGATGCCATGCCCGTGTTGCGGCTCCAAGAGCTCAATTGGGTCTACCAGAGCTGACTCTTGGTATTATTCCTGGATTTGGAGGAACACAGCGTCTTCCAAGGCTTATTGGGCTGTCTAAAGCTGTTGAAATGATGCTGACATCTAAACCAATCACATCGGAAGAAGGGAGGAAATTAGGACTTATTGATGCTATTGTGTCTTCTGAGGAGTTACTAAATGCATCTAGGTTGTGGGCACTTGAAATTGGAGAGAGGTGCAAACCTTGGGTTCGTTCACTTCATAGGACGGACAAAATTGGTTCTCTGTCTGAAGCACGTGAGGTGTTGAGAACTGCCAGGCAACAAGTAAAGAAGACTGTTCCACATTTGCCTCAGCAGCTGGCTTGTGTAGATGTGATTGAACATGGAATAGTCCATGGAGGCTACAGTGGTGTTCTAAAGGAGGCAGAAGTATTCAAACAATTGGTTGTATCTGACACCGCAAAAGGTTTAATTAATGTCTTCTTTTCTCAGCGGGCGATATCAAAGGTGCCTGGCGTAACCGATATCGGCCTTAAGCCCAGAAATGTGAAAAAAGCTGCTGTTATTGGAGGAGGTCTAATGGGTTCTGGCATTGCTACAGCTCTTATACTAGGCAACATTCATGTTATACTCAAGGAAATCAATCCTGAATTTCTTCTGAAGGGAATAAAAACAATAGAAGCAAATGTTAATGGCTTAGTAAGAAGAGGAAAGTTGACGAAACAGAAGGCAGATGCTGCACTGTCACTGCTTAGAGGTGTTCTGGATTACTCAGAATTTAAAGATGTGGACTTGGTCATTGAGGCTGTAATTGAAAATATCAGTCTCAAACAAACTATATTTAGTGATCTTGAGAAGATTTGTCCTCCACACTGCATTTTAGCATCAAACACATCAACTATTGACCTTGATGTTGTTGGTAAAACGACCAGCTCTCAAAATCGCATTGCGGGTGCTCATTTTTTCAGTCCTGCCCACATTATGCCTCTTTTGGAGATTATACGAACCGATAAAACATCTGCACAAGTGATTCTTGATCTGATAACAGTTGGTAAAATCATAAAGAAGACACCTGTTGTGGTGGGTAATTGTACTGGCTTTGCAGTGAATAAAACATTCTTCCCATATTCACAAGGTGCCCATTTGTTGGTCAACTTGGGCGTGGATGTTTTCAGAATTGACACATTGATACGCAACTTTGGCTTTCCGATTGGTCCTTTCCAGCTTCAAGACTTGGCTGGCTATGGAGTTGCCGTTGCTACCTCAAAAGTATTTGCTGATGCTTTTTCTGATCGCATATTTAAATCTCCACTGCTTGATCTTCTGATCAAATCTGGGCGAAATGGCAAAAACAATGGGAAAGGGTACTACATTTATGAAAAGGCTGGCAAGCCAAAACCTGATCCTTCAATACTACCAATCATTGAGGAGTCTAGAAGACTTTGCAATATTATGCCCAATGGAAAGCCTATATCTGTTACTGACCAAGAGATCGTGGAGATGATACTCTTCCCAGTAGTTAATGAGGCATGCCGTGTTCTAGAAGATGGAGTTGTTATTCGAGCATCAGACCTTGACATTGCATCTGTTCTTGGAATGAGCTTCCCAAATTACCGGTTTGATTTCCTTTATTCACTCTTTAAAATTGACAATAACTGA

Predicted protein sequences of Glyma09g32430

Limit To All Plant Sequences

>Glyma09g32430.1   sequence type=predicted peptide   gene model=Glyma09g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALPKVDFEVGADGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGRFSGGFDISVMQKVHRTGDSSHLPDVSVELVVNSIEDSKKPVVAAVAGLALGGGLELAMGCHARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKLGLIDAIVSSEELLNASRLWALEIGERCKPWVRSLHRTDKIGSLSEAREVLRTARQQVKKTVPHLPQQLACVDVIEHGIVHGGYSGVLKEAEVFKQLVVSDTAKGLINVFFSQRAISKVPGVTDIGLKPRNVKKAAVIGGGLMGSGIATALILGNIHVILKEINPEFLLKGIKTIEANVNGLVRRGKLTKQKADAALSLLRGVLDYSEFKDVDLVIEAVIENISLKQTIFSDLEKICPPHCILASNTSTIDLDVVGKTTSSQNRIAGAHFFSPAHIMPLLEIIRTDKTSAQVILDLITVGKIIKKTPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDTLIRNFGFPIGPFQLQDLAGYGVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKAGKPKPDPSILPIIEESRRLCNIMPNGKPISVTDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMSFPNYRGGIVFWADLVGANHIYTSLKKWAQLYGNFYKPSRYLEERALKGIPLSAPASSTPKSMARL*

>Glyma09g32430.2   sequence type=predicted peptide   gene model=Glyma09g32430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALPKVDFEVGADGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGRFSGGFDISVMQKVHRTGDSSHLPDVSVELVVNSIEDSKKPVVAAVAGLALGGGLELAMGCHARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKLGLIDAIVSSEELLNASRLWALEIGERCKPWVRSLHRTDKIGSLSEAREVLRTARQQVKKTVPHLPQQLACVDVIEHGIVHGGYSGVLKEAEVFKQLVVSDTAKGLINVFFSQRAISKVPGVTDIGLKPRNVKKAAVIGGGLMGSGIATALILGNIHVILKEINPEFLLKGIKTIEANVNGLVRRGKLTKQKADAALSLLRGVLDYSEFKDVDLVIEAVIENISLKQTIFSDLEKICPPHCILASNTSTIDLDVVGKTTSSQNRIAGAHFFSPAHIMPLLEIIRTDKTSAQVILDLITVGKIIKKTPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDTLIRNFGFPIGPFQLQDLAGYGVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKAGKPKPDPSILPIIEESRRLCNIMPNGKPISVTDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMSFPNYRFDFLYSLFKIDNN*

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