Glyma09g32390 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g32390

Feature Type:	gene_model
Chromosome:	Gm09
Start:	38923513
stop:	38927734
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g32390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24550	AT	Annotation by Michelle Graham. TAIR10: proline extensin-like receptor kinase 1 \| chr3:8960411-8963303 FORWARD LENGTH=652	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0052541	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF822	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G7KPX0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Somatic embryogenesis receptor kinase n=1 Tax=Medicago truncatula RepID=G7KPX0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L4I8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L4I8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g32390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g32390

Paralog	Evidence	Comments
Glyma07g09420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g32390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g191300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g32390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g32390

Limit To All Plant Sequences

>Glyma09g32390.1   sequence type=CDS   gene model=Glyma09g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACTGCCCCCGCGCCGTCTTCGCCGCCGGCGAATAACGGCACCGCGCCTCCGCCGTCAACTCCGGCCACTCCCTCCGCACCGCCTCCCGCCACACCTTCCGCGCCGCCACCCTCAACTCCGTCGTCTCCTCCGCCGGCAACTCCGTCGTCTCCTCCGCCGGCGACACCTTCCTCGCCACCTCCGGCAACTCCTTCCTCTCCCCCTCCGGCGACTCCCTCTTCTCCTCCACCGTCCACTCCTTCTGCTTCTCCTCCACCGTCCACTCCAACCACGCCATCGACTTCTCCGCCGTCGCCGCCGTCGACATCGCCACCGTCGCCACCCAGTGGCGGCAGCACTCCGAGTCCACCGTCTCGGAGCTCGCCCTCTCCTCCGTCCGGATCGAGCCCGACCACTCCGTCGCCTCCGTCGTCTTCCTCGTCGAGCATTTCGACCGGCGTGGTGGTCGGAATCGCCGTTGGGGCTGTGGCGGTTCTTCTTGTGTTGAGCATTCTCTGCATATGCTGTCGGAAGAAGAAGAGAAGACGTGATGAAGAGTACCATGCTCCGCCGCCGCAGCAGCAGCAACCGCCGCGGGGACCTAAAGATGGTGCATATGGTGGTCCCCCAGGCCAATGGCAACACAATGTTCCTCCTCCTCAAGATCATGTGGTCTCAATGATGCCTCCAAAGCCATCGCCACCGCCTGCTCCACCAGCTTATGCTGGTCAACCTCCCCCACCACCGCCTCCTTTCATCAGCAGCAGTGGCGGATCTGGATCAAACAATTCAGGCGGTGAATTTCTTCCTCCTCCTTCTCCAGGAATTTCATTGGGGTTCTCTAAGAGCACATTCACGTATGAGGAGTTGGCACGCGCAACTGATGGCTTCTCTGATGCCAACCTCCTTGGACAAGGAGGATTTGGATATGTGCACAGAGGAATTCTTCCCAACGGCAAGGAGGTGGCAGTGAAGCAATTGAAGGCTGGAAGCGGGCAAGGGGAGCGTGAATTCCAAGCTGAAGTTGAGATAATTAGCCGTGTCCATCACAAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGGAAAAGGGAGACCTACCATGGATTGGCCCACAAGACTAAGAATTGCTTTAGGATCTGCTAAGGGACTGGCGTATCTTCATGAAGATTGTCATCCTAAGATCATCCATCGTGATATCAAATCTGCCAACATCCTTCTGGATTTTAAGTTTGAAGCAAAGGTTGCAGATTTTGGTCTTGCAAAGTTTTCTTCTGATGTCAATACCCATGTTTCTACTCGAGTGATGGGGACTTTTGGGTATTTGGCTCCAGAATATGCTTCTAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAATCATGCTCCTTGAGTTAATAACCGGACGACGGCCAGTTGATAAAAATCAAACTTACATGGAGGATAGTTTGGTAGATTGGGCTAGGCCTTTGCTCACACGAGCTTTGGAAGAGGATGATTTTGATTCTATTATTGACCCAAGGCTCCAGAATGACTATGATCCTCATGAGATGGCACGAATGGTGGCTTCTGCTGCGGCTTGCATACGTCATTCGGCAAAGCGTCGACCAAGGATGAGCCAGGTTGTCCGCGCTCTCGAAGGAGATGTCTCTCTAGCAGATCTGAATGAAGGAATAAGACCTGGACACAGCACTATGTATAGTTCTCATGAAAGCTCAGATTATGACACTGCACAGTACAAGGAAGACATGAAAAAGTTCAGGAAAATGGCATTGGGAACTCAGGAGTATGGTGCAAGCAGTGAGTACAGTGCCGCTACAAGTGAGTATGGTTTAAACCCATCAGGCTCAAGTAGTGAAGCACAGAGCCGCCAAACCACAAGGGAAATGGAAATGAGAAAGATGAAGAACAATCAAGGTTTCAGTGGAAGTTCTTGA

Predicted protein sequences of Glyma09g32390

Limit To All Plant Sequences

>Glyma09g32390.1   sequence type=predicted peptide   gene model=Glyma09g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTAPAPSSPPANNGTAPPPSTPATPSAPPPATPSAPPPSTPSSPPPATPSSPPPATPSSPPPATPSSPPPATPSSPPPSTPSASPPPSTPTTPSTSPPSPPSTSPPSPPSGGSTPSPPSRSSPSPPSGSSPTTPSPPSSSSSSISTGVVVGIAVGAVAVLLVLSILCICCRKKKRRRDEEYHAPPPQQQQPPRGPKDGAYGGPPGQWQHNVPPPQDHVVSMMPPKPSPPPAPPAYAGQPPPPPPPFISSSGGSGSNNSGGEFLPPPSPGISLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGIMLLELITGRRPVDKNQTYMEDSLVDWARPLLTRALEEDDFDSIIDPRLQNDYDPHEMARMVASAAACIRHSAKRRPRMSQVVRALEGDVSLADLNEGIRPGHSTMYSSHESSDYDTAQYKEDMKKFRKMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRKMKNNQGFSGSS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain