SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19600 | AT | Annotation by Michelle Graham. TAIR10: sulfate transporter 3;5 | chr5:6613113-6616891 REVERSE LENGTH=634 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0008272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfate transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0008271 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: secondary active sulfate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015116 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sulfate transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG0236 | KOG | Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) | JGI | ISS | |
| PTHR11814 | Panther | SULFATE TRANSPORTER | JGI | ISS | |
| PTHR11814:SF46 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00916 | PFAM | Sulfate transporter family | JGI | ISS | |
| PF01740 | PFAM | STAS domain | JGI | ISS | |
| UniRef100_I1L4G2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L4G2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q0P7I2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sst1 protein n=1 Tax=Lotus japonicus RepID=Q0P7I2_LOTJA | SoyBase | E_val: 0 | ISS |
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Glyma09g32110 not represented in the dataset |
Glyma09g32110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g09710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g188700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g32110.3 sequence type=CDS gene model=Glyma09g32110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCCATTGGTAACAGCGAGGTTAAAAATCATAATCAGCACCATGAGGATGGTGGTGATAATGGGGTGAATTTCTCGATCCAGAGAGGGTTTGGGACGAAACTGAAGGAGGCGTTGAAGGAAGCGTTGTTTCCGGACGACCCCTTCAGGCAGTTCAAGAAGGAGCAGAAGCCAATGCGGAGAGTGATGAAAGGGGTGCAATACTACATCCCAATCTTTGAGTGGCTCCCTACTTACAATTGGCGCCTCTTTGTCTCTGACTTGATCGCTGGCCTAACCATCTCAAGCCTTGCTATCCCTCAGGGCATTAGTTATGCCAAACTTGCTGACCTTCCTCCCCTCGTTGGCCTTTATTCCAGCTTTGTCCCACCTTTGATCTATGCTGTTTTTGGGAGTTCAAGGCACATGGCAGTCGGGACGATAGCAGGAGCATCGTTGCTTATTGCTCAAACCATACAAACCGTGGCAGACCCAGTAGAAGATCCAACGTTGTATCTTCATTTGATTTTCACCACCACCTTTATCACCGGTGTTTTCCAGGCTTGTTTGGGATTATTTAGGCTGGGGATAGTGGTGGACTTCTTTTCCCATGCTACCATTAATGGCTTCATCGGAGGGACAGCAGTAGCTCTCATCCTCCAACAACTAAAGGGCGTATTTGGAATGAAACATTTTTCAACTAAATCGAACATGGTCGAAGTGGTGAAGAGCATTGTCCGCAATAGACACGAGATTAGGTGGGAACCTGCGGTTCTTGGCGTCATCTTGGTTGCTTTCTTGCAATTTACCAAGCACCTGAGGAATAAGAATCCAAAACTCTTTTGGGTAACGGCTATAGCTCCAATGGTGACTTTAGTAGTTTCTGGGGTTTTCACCTACCTCGTCAAGGGCCAAGATCATGGAATTCAAATTGTGGGCCATCTAGATAAAGGACTAAATCCCTTGTCCATCCACTATCTGAACTTTAATTCTAAATATTTACCAGCAGTTATGCAAGCTGGTCTTATCACAGGGGTGTTGTCATTAGCGACTGCGGTGAATTACAACGCAGGGTGTAAAACTGCGATGGCAAACGTGGTACAGGCAATAATAGTGGCACTCGCACTACTATTTTTGGCGCCACTATTTGGCTTCACCCCTCTTGTTGCCCTTTCAGCTATTATTATTTCTGCCATGCTTGGGCTCATTCCTTTCGAAGAAGTCATCCATCTCTACAAAGTTGACAAGTTTGACTTTGTTATTTGCATGGTTGCCTTCCTTGGAGTTATCTTAGTAAGCATGGATATTGGCCTCATGCTGTCTGTTGGACTCGGCATTCTTAGAGCACTTATGTATGTGGCTAGACCTGCGTCATGCAAGCTTGGAAAGTTACCTGAAATTGGTTTATATAGAGACACGAAGCAATATAAAGTATTAACATACCCAGGAGTTCTTGTTGTACAACTTGGTTCTCCCGTTTACTTTGCAAATTCTTTATACGTCAAAGAAAGGATTATGAGGTACATTCGAAGTGAGGAAAGCTCTACTGGAGATGTAGTTGAGCACATCATACTTGATTTGTCAGGAGTGACAGCCATTGATACAACTGCTATTAAAGCATTGGACGAGTTAATTATAATATTGGGAAAGAATGGAATTAAGGTTTTGTTCGTAAACCCAAGACTGGAGGTGATGGAGAAGCTTATAATGTCCAAGTTTGTTGAGAAAATTGGGAAGGAGTCGTTTTATCTAATATTGGATGATGCAGTGATGGCAAGTCAATATTCACTTCGTTCATCAAAGGCGGCAAATAATGGTCAAGAGGTGGTTTAA
>Glyma09g32110.3 sequence type=predicted peptide gene model=Glyma09g32110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSIGNSEVKNHNQHHEDGGDNGVNFSIQRGFGTKLKEALKEALFPDDPFRQFKKEQKPMRRVMKGVQYYIPIFEWLPTYNWRLFVSDLIAGLTISSLAIPQGISYAKLADLPPLVGLYSSFVPPLIYAVFGSSRHMAVGTIAGASLLIAQTIQTVADPVEDPTLYLHLIFTTTFITGVFQACLGLFRLGIVVDFFSHATINGFIGGTAVALILQQLKGVFGMKHFSTKSNMVEVVKSIVRNRHEIRWEPAVLGVILVAFLQFTKHLRNKNPKLFWVTAIAPMVTLVVSGVFTYLVKGQDHGIQIVGHLDKGLNPLSIHYLNFNSKYLPAVMQAGLITGVLSLATAVNYNAGCKTAMANVVQAIIVALALLFLAPLFGFTPLVALSAIIISAMLGLIPFEEVIHLYKVDKFDFVICMVAFLGVILVSMDIGLMLSVGLGILRALMYVARPASCKLGKLPEIGLYRDTKQYKVLTYPGVLVVQLGSPVYFANSLYVKERIMRYIRSEESSTGDVVEHIILDLSGVTAIDTTAIKALDELIIILGKNGIKVLFVNPRLEVMEKLIMSKFVEKIGKESFYLILDDAVMASQYSLRSSKAANNGQEVV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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