SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13350 | AT | Annotation by Michelle Graham. TAIR10: NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 | SoyBase | E_val: 2.00E-169 | ISS |
| GO:0006913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport | SoyBase | N/A | ISS |
| GO:0009615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to virus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0702 | KOG | Predicted GTPase-activating protein | JGI | ISS | |
| PTHR23180 | Panther | CENTAURIN/ARF | JGI | ISS | |
| PTHR23180:SF87 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01412 | PFAM | Putative GTPase activating protein for Arf | JGI | ISS | |
| UniRef100_G7KNF9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Arf-GAP domain and FG repeats-containing protein n=1 Tax=Medicago truncatula RepID=G7KNF9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339154 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339154 related cluster n=1 Tax=unknown RepID=UPI0002339154 | SoyBase | E_val: 0 | ISS |
|
Glyma09g32050 not represented in the dataset |
Glyma09g32050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g09751 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g188300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g32050.3 sequence type=transcript gene model=Glyma09g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGTAACTGTTTACCGACTAAAGACACCGAATTTTGGTGCTAAAACCTCTCTTAGCTGTACAAAGCCGTCATTGCATTACGAAGCGAAGAAATCTGCGACTCTTTTCTCTCTCTGTTTCGGTGGTGCCTGACTGCTTCATCCCTCTTTCTTCTCTTCAATCAAAGTCTCCAACCTTTTCCTCTGAATTGAAGCAGCGGAGGAGATGGCGAGTCCCATGAAGGAAGATGAGAAGAACGAGCGCGTGATTCGAGGTCTTCTCAAGCTTCAACATAATCGCAGATGCGTTAACTGCAACAGTCTGGGGCCACAATATGTGTGCATAAATTTCTGGACGTTTGTTTGCACGAACTGCAGTGGAATACAGATCCATCATTCATTTATTCTTATTAGCATGGTTGGTGCCAGTAATGTTGACAGGCTCCGAAACTTTATTAAACATGTTTATGTGGATAGAAGATTCACTGGAGACAAGACCAACGACAAACCACAAAGAGGCAAGCCGGGTGACAAAGATGATTTTTATCAAGGAGGATCTATAAGTCCTCATTATGAGGACACATATGAACGTCGTTATAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGAATATGATAAAGACAGTAGGCAATATGGTGATCATAAGAGAAGTCCTGGTCGTCCTCCAATAATTAATGATTGGCGCCGTGAAGAACGTAGATTATCAGATGGAGATTATAAGTTGGAAAGCCAATCTCCTGAGCGAGCCAAAGATGTGGATACTTCAAGCCCACCTGTGGTCCGACCTGTTAGAGATATTTTGGGAGAAAATGTAGTGCCTCTTCGGATAAGTGAACCACCCAAAACAAACAGTGGAAGACCTGCTGATAGGTCAGCACCAACACAGAGAACTGCATCTTCCAGTAGCTTGGCTTCTGGCAATGAAAACCCATTAGATGTAAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTCCAGTAGCTCCATCAATTCCTCAAGCCCAACAAACTACTGTGCTTCAACCTGTTGTGCAGCCAGCAAACTCTAGTAATGACAATTGGGCCTCTTTTGATGTTGCTCCTGCAACAAAAGCAACTCCAAGCTCCTCAAATTTAAGTCCACTTGAATCAATGTTGTCCCAATTGTCTGTGCCAGCATCTTTACCTGCTCAAGTTTCTGGAGTCCAAGGACCTATTCCAGCATCATCTCTTACTTCTACTTCTGGAGCTGCAAGTGTTAGCGGTTTCTCAGCTTTCCCACCCAGCAATGCTTCAGTACCGTCTCCTGGATTGACATCAGTGTCACCTCTTAATAATGCAGGACAGTGGGCCAATTTGCAACAGCAGCAACCATTTTTCCCTGTTGCTGTTAGTCAGTCTAGTACACAACAATTTATACCACCATTAGGTGGAACAGCAAATAATCAGCCATGGAATGTACCTTCTGCACCCACAGTGCAAGGGCATCCAAGCACACCAATGCCACATACATACCCTCATGCCTCAAAGCCTGCCAATGAGACTATATCCGGTGTTGTTTCACAACCTCCTGTTGCAGAAGTTAGAGCAAGTGGAAGGAAAGAACTTCCCGAGGATCTGTTCACTGTAAAATATTCTTCCTTCCCTGCTCCAGTCCTAGGTTGGCAAATGGGTGTTCCCCATGGCATGGGTATCTCAATGCAATACAATAATGTGCCTGTGCCAAGTTTTCCACAGCCATCAAAGTCAACAAATCCGTTTGATGTCAGCAGTGAACCAACTGCAAATCAAGCCCCAACTTTTCCTTCCATGTCATCCTTGCAAGGTGCCCTGCCTAGTGTACCACCTGCTGGTGCAGTGCACCCTTCAAGCATGGGTAATCCAACACATGGCTGGACTCCTCCCCCAGCATCATCATTTCTGCCTGCACAAGCACAAATGCATGCAACTGCATTGGGACCGAGGGCATATATGGAGCAACAAATTCCGACTAACATGCCAATGCCAAGGCAAGAAGTTGGGAATTTTGGTAACCAAGGAGCTGTTTTTGGCTTGTCAAATCCAAATCAGCAGCTGATCGGTAGGTTATCAAACACTCCCACCTCTAACTCATTTCCTACAGGAGGGAACCCATTCGGATAATGTGAAGAATTGTCCACCTGAAATTGTAAAGTCAAGCATCAACTTGTTGCTCCTTGTACAAATATGTGCAAGTTTCAGCTTCGCTTTCTGTTGTTTGTCAGATTGATACACTTACGCATAATGAGAGGTTTGTGGTAATCCCTGGATTGAAGTCAAATATTTGCATTTGGCCGTGTAAATTGTTATTTCTATATGAATGGTGAAGACAAAATCCACCTTCTTGGAAGAGGGGAAAACAGTGAGATGAGGAACGGATGAATGAAAGGGGTGCAGAGAACCATTCGAGGAGACATAATTTTTTCTTTCTTTTTTGTGGGTGCATCCATGTGTTGTTCATTTGTAATTTGTAGTATAGATTGGTTGGTGGTGTTTGCTAGTTTGGTGCCCCCTACTTGTGTTATTTTTATTTTTTTTGGTTTTACAATATTATATGATTTTGTAATCTTGCAATTTTGGTAAGGATTTTCTTTTTTATGGATAGTACATGAAATGAAATCATCTTATTTGTTTTGTAATGGGGAGGGCCAGAGGCCAAAAAACAAAACTATACAACTGCCCTAACACAGTGAGGGTCGAAGATCCCCCATAACATCATTCAATAACAGTATCGTTTAACGAACAACCCGCAGGGGGAGAAGCCCAGGCATTCACTCCCAACGAAGCATTATGAGCAGAATCTGCCAACCAATCAGTCATGCTGTTAGCCGGTGGAAGTGGGTTGTAAGATAACGATGTGTATATTTTTAATTGCCCTCCTTAAAATATAAATACAAACGCTGTGCATTCATTGTGTGGACTTAATGGTCTTGTAAAGTTAACATATGGCATGACTAGAAAGATCTCACATTGTCTCATTTCCTCCTTTTCTCTCTCCACACCACCCACCATTTGTTGATTATCTGAAATCCAATCTCTCCGAATCTGCACACACTCAAGTTTTTCACGTTCTTTCTAGGTCTCGCTTTTTTAGGGTGTCACTCTCGGATGAATTATCACTGTTACTGCCTATCTTCTTTAACCCACCTCAAATGCAAAAGCTACCTCAATTTCCACCAACCATGGTCCTTTACCTA
>Glyma09g32050.2 sequence type=CDS gene model=Glyma09g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAGTCCCATGAAGGAAGATGAGAAGAACGAGCGCGTGATTCGAGGTCTTCTCAAGCTTCAACATAATCGCAGATGCGTTAACTGCAACAGTCTGGGGCCACAATATGTGTGCATAAATTTCTGGACGTTTGTTTGCACGAACTGCAGTGGAATACACCGGGAATTCACTCATCGAGTAAAATCAGTTTCAATGGCTAAGTTTACTTCACAAGAAGTTAGTGCCCTTCAAGAAGGAGGGAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGATGCACTACGTCATTCTTTCCCTGATAGCAGTAATGTTGACAGGCTCCGAAACTTTATTAAACATGTTTATGTGGATAGAAGATTCACTGGAGACAAGACCAACGACAAACCACAAAGAGGCAAGCCGGGTGACAAAGATGATTTTTATCAAGGAGGATCTATAAGTCCTCATTATGAGGACACATATGAACGTCGTTATAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGAATATGATAAAGACAGTAGGCAATATGGTGATCATAAGAGAAGTCCTGGTCGTCCTCCAATAATTAATGATTGGCGCCGTGAAGAACGTAGATTATCAGATGGAGATTATAAGTTGGAAAGCCAATCTCCTGAGCGAGCCAAAGATGTGGATACTTCAAGCCCACCTGTGGTCCGACCTGTTAGAGATATTTTGGGAGAAAATGTAGTGCCTCTTCGGATAAGTGAACCACCCAAAACAAACAGTGGAAGACCTGCTGATAGGTCAGCACCAACACAGAGAACTGCATCTTCCAGTAGCTTGGCTTCTGGCAATGAAAACCCATTAGATGTAAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTCCAGTAGCTCCATCAATTCCTCAAGCCCAACAAACTACTGTGCTTCAACCTGTTGTGCAGCCAGCAAACTCTAGTAATGACAATTGGGCCTCTTTTGATGTTGCTCCTGCAACAAAAGCAACTCCAAGCTCCTCAAATTTAAGTCCACTTGAATCAATGTTGTCCCAATTGTCTGTGCCAGCATCTTTACCTGCTCAAGTTTCTGGAGTCCAAGGACCTATTCCAGCATCATCTCTTACTTCTACTTCTGGAGCTGCAAGTGTTAGCGGTTTCTCAGCTTTCCCACCCAGCAATGCTTCAGTACCGTCTCCTGGATTGACATCAGTGTCACCTCTTAATAATGCAGGACAGTGGGCCAATTTGCAACAGCAGCAACCATTTTTCCCTGTTGCTGTTAGTCAGTCTAGTACACAACAATTTATACCACCATTAGGTGGAACAGCAAATAATCAGCCATGGAATGTACCTTCTGCACCCACAGTGCAAGGGCATCCAAGCACACCAATGCCACATACATACCCTCATGCCTCAAAGCCTGCCAATGAGACTATATCCGGTGTTGTTTCACAACCTCCTGTTGCAGAAGTTAGAGCAAGTGGAAGGAAAGAACTTCCCGAGGATCTGTTCACTGTAAAATATTCTTCCTTCCCTGCTCCAGTCCTAGGTTGGCAAATGGGTGTTCCCCATGGCATGGGTATCTCAATGCAATACAATAATGTGCCTGTGCCAAGTTTTCCACAGCCATCAAAGTCAACAAATCCGTTTGATGTCAGCAGTGAACCAACTGCAAATCAAGCCCCAACTTTTCCTTCCATGTCATCCTTGCAAGGTGCCCTGCCTAGTGTACCACCTGCTGGTGCAGTGCACCCTTCAAGCATGGGTAATCCAACACATGGCTGGACTCCTCCCCCAGCATCATCATTTCTGCCTGCACAAGCACAAATGCATGCAACTGCATTGGGACCGAGGGCATATATGGAGCAACAAATTCCGACTAACATGCCAATGCCAAGGCAAGAAGTTGGGAATTTTGGTAACCAAGGAGCTGTTTTTGGCTTGTCAAATCCAAATCAGCAGCTGATCGGTAGGTTATCAAACACTCCCACCTCTAACTCATTTCCTACAGGAGGGAACCCATTCGGATAA >Glyma09g32050.3 sequence type=CDS gene model=Glyma09g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAGTCCCATGAAGGAAGATGAGAAGAACGAGCGCGTGATTCGAGGTCTTCTCAAGCTTCAACATAATCGCAGATGCGTTAACTGCAACAGTCTGGGGCCACAATATGTGTGCATAAATTTCTGGACGTTTGTTTGCACGAACTGCAGTGGAATACAGATCCATCATTCATTTATTCTTATTAGCATGGTTGGTGCCAGTAATGTTGACAGGCTCCGAAACTTTATTAAACATGTTTATGTGGATAGAAGATTCACTGGAGACAAGACCAACGACAAACCACAAAGAGGCAAGCCGGGTGACAAAGATGATTTTTATCAAGGAGGATCTATAAGTCCTCATTATGAGGACACATATGAACGTCGTTATAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGAATATGATAAAGACAGTAGGCAATATGGTGATCATAAGAGAAGTCCTGGTCGTCCTCCAATAATTAATGATTGGCGCCGTGAAGAACGTAGATTATCAGATGGAGATTATAAGTTGGAAAGCCAATCTCCTGAGCGAGCCAAAGATGTGGATACTTCAAGCCCACCTGTGGTCCGACCTGTTAGAGATATTTTGGGAGAAAATGTAGTGCCTCTTCGGATAAGTGAACCACCCAAAACAAACAGTGGAAGACCTGCTGATAGGTCAGCACCAACACAGAGAACTGCATCTTCCAGTAGCTTGGCTTCTGGCAATGAAAACCCATTAGATGTAAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTCCAGTAGCTCCATCAATTCCTCAAGCCCAACAAACTACTGTGCTTCAACCTGTTGTGCAGCCAGCAAACTCTAGTAATGACAATTGGGCCTCTTTTGATGTTGCTCCTGCAACAAAAGCAACTCCAAGCTCCTCAAATTTAAGTCCACTTGAATCAATGTTGTCCCAATTGTCTGTGCCAGCATCTTTACCTGCTCAAGTTTCTGGAGTCCAAGGACCTATTCCAGCATCATCTCTTACTTCTACTTCTGGAGCTGCAAGTGTTAGCGGTTTCTCAGCTTTCCCACCCAGCAATGCTTCAGTACCGTCTCCTGGATTGACATCAGTGTCACCTCTTAATAATGCAGGACAGTGGGCCAATTTGCAACAGCAGCAACCATTTTTCCCTGTTGCTGTTAGTCAGTCTAGTACACAACAATTTATACCACCATTAGGTGGAACAGCAAATAATCAGCCATGGAATGTACCTTCTGCACCCACAGTGCAAGGGCATCCAAGCACACCAATGCCACATACATACCCTCATGCCTCAAAGCCTGCCAATGAGACTATATCCGGTGTTGTTTCACAACCTCCTGTTGCAGAAGTTAGAGCAAGTGGAAGGAAAGAACTTCCCGAGGATCTGTTCACTGTAAAATATTCTTCCTTCCCTGCTCCAGTCCTAGGTTGGCAAATGGGTGTTCCCCATGGCATGGGTATCTCAATGCAATACAATAATGTGCCTGTGCCAAGTTTTCCACAGCCATCAAAGTCAACAAATCCGTTTGATGTCAGCAGTGAACCAACTGCAAATCAAGCCCCAACTTTTCCTTCCATGTCATCCTTGCAAGGTGCCCTGCCTAGTGTACCACCTGCTGGTGCAGTGCACCCTTCAAGCATGGGTAATCCAACACATGGCTGGACTCCTCCCCCAGCATCATCATTTCTGCCTGCACAAGCACAAATGCATGCAACTGCATTGGGACCGAGGGCATATATGGAGCAACAAATTCCGACTAACATGCCAATGCCAAGGCAAGAAGTTGGGAATTTTGGTAACCAAGGAGCTGTTTTTGGCTTGTCAAATCCAAATCAGCAGCTGATCGGTAGGTTATCAAACACTCCCACCTCTAACTCATTTCCTACAGGAGGGAACCCATTCGGATAA
>Glyma09g32050.2 sequence type=predicted peptide gene model=Glyma09g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPMKEDEKNERVIRGLLKLQHNRRCVNCNSLGPQYVCINFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVSALQEGGNQRAKEIYFKEWDALRHSFPDSSNVDRLRNFIKHVYVDRRFTGDKTNDKPQRGKPGDKDDFYQGGSISPHYEDTYERRYSDRSSPGGRSPEYDKDSRQYGDHKRSPGRPPIINDWRREERRLSDGDYKLESQSPERAKDVDTSSPPVVRPVRDILGENVVPLRISEPPKTNSGRPADRSAPTQRTASSSSLASGNENPLDVKLETTKSLIDFDADPEPPVAPSIPQAQQTTVLQPVVQPANSSNDNWASFDVAPATKATPSSSNLSPLESMLSQLSVPASLPAQVSGVQGPIPASSLTSTSGAASVSGFSAFPPSNASVPSPGLTSVSPLNNAGQWANLQQQQPFFPVAVSQSSTQQFIPPLGGTANNQPWNVPSAPTVQGHPSTPMPHTYPHASKPANETISGVVSQPPVAEVRASGRKELPEDLFTVKYSSFPAPVLGWQMGVPHGMGISMQYNNVPVPSFPQPSKSTNPFDVSSEPTANQAPTFPSMSSLQGALPSVPPAGAVHPSSMGNPTHGWTPPPASSFLPAQAQMHATALGPRAYMEQQIPTNMPMPRQEVGNFGNQGAVFGLSNPNQQLIGRLSNTPTSNSFPTGGNPFG* >Glyma09g32050.3 sequence type=predicted peptide gene model=Glyma09g32050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPMKEDEKNERVIRGLLKLQHNRRCVNCNSLGPQYVCINFWTFVCTNCSGIQIHHSFILISMVGASNVDRLRNFIKHVYVDRRFTGDKTNDKPQRGKPGDKDDFYQGGSISPHYEDTYERRYSDRSSPGGRSPEYDKDSRQYGDHKRSPGRPPIINDWRREERRLSDGDYKLESQSPERAKDVDTSSPPVVRPVRDILGENVVPLRISEPPKTNSGRPADRSAPTQRTASSSSLASGNENPLDVKLETTKSLIDFDADPEPPVAPSIPQAQQTTVLQPVVQPANSSNDNWASFDVAPATKATPSSSNLSPLESMLSQLSVPASLPAQVSGVQGPIPASSLTSTSGAASVSGFSAFPPSNASVPSPGLTSVSPLNNAGQWANLQQQQPFFPVAVSQSSTQQFIPPLGGTANNQPWNVPSAPTVQGHPSTPMPHTYPHASKPANETISGVVSQPPVAEVRASGRKELPEDLFTVKYSSFPAPVLGWQMGVPHGMGISMQYNNVPVPSFPQPSKSTNPFDVSSEPTANQAPTFPSMSSLQGALPSVPPAGAVHPSSMGNPTHGWTPPPASSFLPAQAQMHATALGPRAYMEQQIPTNMPMPRQEVGNFGNQGAVFGLSNPNQQLIGRLSNTPTSNSFPTGGNPFG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
