Report for Sequence Feature Glyma09g32000
Feature Type: gene_model
Chromosome: Gm09
Start: 38571192
stop: 38573564
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g32000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G57880 AT
Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773
SoyBase E_val: 0 ISS
GO:0000162 GO-bp
Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR10024 Panther
SYNAPTOTAGMIN
JGI ISS
PTHR10024:SF97 Panther
C2 DOMAIN-CONTAINING PROTEIN
JGI ISS
PF00168 PFAM
C2 domain
JGI ISS
PF08372 PFAM
Plant phosphoribosyltransferase C-terminal
JGI ISS
UniRef100_G7JJW0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Anthranilate phosphoribosyltransferase-like protein n=1 Tax=Medicago truncatula RepID=G7JJW0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1L4F5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L4F5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g32000
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g32000
Paralog Evidence Comments
Glyma07g09810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g32000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g187900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g32000
Coding sequences of Glyma09g32000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g32000.1 sequence type=CDS gene model=Glyma09g32000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AACCAGAATCAGAACCAAAACCAAAAGAAGAACAAAGAGGATTTCTCTCTGAAGGCGACAACTCCAAACATCAGTGCTGGAAGAGCGATAAGTGGTGATTGGCTCCCAACTGCATTTGACTTGGTTGAGAAAATGCAGTTTCTGTTTGTCAGGGTGGTGAAGGCCAAAGACTTGCCTGAAAAAAGTGAATCTCAACCTTGTAACCCTTTTGTGGAAGTGAATGTTGGAAGCTTCACAGGAACAACCAGATGCATGGAGAAAACCACCACCCCAGAATGGAACCAAGTCTTTGCTTTTGCCAAGGAGAGGATTCAAGTACTAGTTTTGGAGATTGTGGTGAAGAACAAGGGTGAAAATGGTGACCCTAATGATAATGGTGACCTTGATGAGTTCGTGGGACGTGCTGCATTCACAATTGGTGATGTTCCAATGAGGGTTCCTCCCGATAGCCCCTTGGCGCCGCAATGGTACAAGCTTGAGAATCAAAATGGGGTGAAGCTTCAAGGAGAGTTGATGGTTTCTGTTTGGATGGGAACTCAGGCGGATGAAGCTTTTTCTGAGGCTTGGCATTCAGATGCATCAGAGGCTAGTGGTGAAAACATTGCTCACACTCGTTCCAAGGTATATATTTCTCCTAGGCTTTGGTATCTTAGAATTAATGTGATTCAAGCCCAGGATTTGTTGCTAAAAAACAAGAGTGGCAATAATAACTCGGAAATTTTCATCCAAGGTGTTTTGGGGAACTTGGCTTTGAGGAGCCGTTCTATAAAGTGTAGTACAAGCCCCTCGTGGAATGAGGATTTGATGTTTGTTGTGGCAGAACCCTTTGATGATTGCTTGTTTGTGAGCATTGAGCAGGGGAATAACTTCAAGCACGAAAGCTTGGCAATTTGTGCTGTTCCTTTGAAGAATGTGGAGCAGAGAATTGATGCCACTCCACCAGCTAGTGTGTGGTACAATCTTCACAAGCCAAAGGAAAAGGAGGGAGAAGAGCAGGAGGTTAATTTTTCCAGTAAACTTAACATGAGGATCTCTTTAGATGGAGGGTACCATGTTCTTGATGAGGCCACTCACTACACCAGTGATGTAAGGCCATCATCTAAGTATTTGTGCAATCCCAGTATTGGTGTTCTTGAATTGGGAATCCTGAATGCTGTGGGGCTCTCTCCAATGAGCAAGGAAAATCGGACCAATGCGTTTTGTGTAGCTAAGTACGGTCCAAAGTGGGTGAGGACAAGGACTATTGTAGATAGTCTTTCTCCCAAATGGAATGAGCAATATACATGGGAAGTGTTTGATCCTTGCACTGTGATCACAATTGTTGTGTTTGACAACGGAAACTTGCATGGAGGCAACAAAAATGCCGGAGGGAAAAAATGTGAAGGACCAGTGGATAGGAGAATTGGCAAGGTGAGGATTCGGTTGTCAACACTTGAAAGTGATAGGATTTACACTCACTCTTACCCTCTTATAAACTTGCACACTCAAGGAGCAAAGAAGATGGGAGAAATTCAATTGGCTGTGAGGTTTTCTTGTCCATCATTGTTGAATGTTTTGCAAACTTATGCACAACCTTTGCTCCCAAGGATGCACTATTTAAGTCCATTGTCTATATTTCAGTTGGATAATTTGAGGAACCAAGCTGCTGCCATCACCACATTGAGGTTTAAAAGGGCTGAACCACCACTGAGCAAAGAGGTTGTGGAGTACATGCTAGACATGGGGGTAAATGTGTGGAGCATGAGGAGGGCAAGAGCTCAGTTTTTCAGGATTGCTAGTCTTCTTAATGTTTTAGTTTCTGTTGCTAAACAGTTTCGTGAGATACATGCTTGGAAGAATTCAATTACCACGGTGGTTACCAGTGTTGAAGAACTAGAAGAAGAATTTGATTCCTTTCCGTCGAAATTCAGTGGTGAAAATTTGAAGAGGAGGTATGATCGATTAAGAGGTGTCGCGGGGAGGGTGCTAGAAGTGATGGCAGACTTGGCAACTCAAGGAGAGAGGGTGCAGTCTCTACTCAGCTGGAGGGATCCAAGAGCAACAGCTTTGTTTGTTATTTTCTGTTCTGTGGCTGTCATTGTGACATATTTGGTTCCTTTCCGCATTTTGGTGTTCATTTGGGTGACTTATATGTTAAGGCCTCCAAGGTTTCGATTTGATATTCCTGCAGTCCCTCAAAACTTCCTCAGGAGGATGCCTGCAAAATCAGATGGCTTGCTATGA
Predicted protein sequences of Glyma09g32000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g32000.1 sequence type=predicted peptide gene model=Glyma09g32000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
NQNQNQNQKKNKEDFSLKATTPNISAGRAISGDWLPTAFDLVEKMQFLFVRVVKAKDLPEKSESQPCNPFVEVNVGSFTGTTRCMEKTTTPEWNQVFAFAKERIQVLVLEIVVKNKGENGDPNDNGDLDEFVGRAAFTIGDVPMRVPPDSPLAPQWYKLENQNGVKLQGELMVSVWMGTQADEAFSEAWHSDASEASGENIAHTRSKVYISPRLWYLRINVIQAQDLLLKNKSGNNNSEIFIQGVLGNLALRSRSIKCSTSPSWNEDLMFVVAEPFDDCLFVSIEQGNNFKHESLAICAVPLKNVEQRIDATPPASVWYNLHKPKEKEGEEQEVNFSSKLNMRISLDGGYHVLDEATHYTSDVRPSSKYLCNPSIGVLELGILNAVGLSPMSKENRTNAFCVAKYGPKWVRTRTIVDSLSPKWNEQYTWEVFDPCTVITIVVFDNGNLHGGNKNAGGKKCEGPVDRRIGKVRIRLSTLESDRIYTHSYPLINLHTQGAKKMGEIQLAVRFSCPSLLNVLQTYAQPLLPRMHYLSPLSIFQLDNLRNQAAAITTLRFKRAEPPLSKEVVEYMLDMGVNVWSMRRARAQFFRIASLLNVLVSVAKQFREIHAWKNSITTVVTSVEELEEEFDSFPSKFSGENLKRRYDRLRGVAGRVLEVMADLATQGERVQSLLSWRDPRATALFVIFCSVAVIVTYLVPFRILVFIWVTYMLRPPRFRFDIPAVPQNFLRRMPAKSDGLL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
