Glyma09g31910 - SoyBase

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Report for Sequence Feature Glyma09g31910

Feature Type:	gene_model
Chromosome:	Gm09
Start:	38492217
stop:	38493632
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g31910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68630	AT	Annotation by Michelle Graham. TAIR10: PLAC8 family protein \| chr1:25768653-25769458 FORWARD LENGTH=161	SoyBase	E_val: 2.00E-35	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR15907	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15907:SF11	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04749	PFAM	PLAC8 family	JGI		ISS
UniRef100_G7JLA3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Placenta-specific gene 8 protein n=1 Tax=Medicago truncatula RepID=G7JLA3_MEDTR	SoyBase	E_val: 1.00E-34	ISS
UniRef100_I1L4E6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L4E6_SOYBN	SoyBase	E_val: 8.00E-111	ISS

Expression Patterns of Glyma09g31910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g31910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g187000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g31910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g31910

Limit To All Plant Sequences

>Glyma09g31910.2   sequence type=transcript   gene model=Glyma09g31910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTTTGTTCGAATTAATTGGACAAAAGTTAAAAGGTACATACGAAGTCAATATCAACCCATGGAACTTTTCTGTGGCTACATATATATATGCAAAAGACAAAAGATAACCCAGTTAAATAGTACTATTTTGTGTCAATCTCCTCATCGATCTCATTTTGTCTCTGATTAGAGCTTCAAAATGGATACCGGTGAAGGTAAGTCAGCACAAGCACCAAACATCAATGCTCCACCCACTGGACAATGGACTACTGGTTTATTTGATTGCTTTGACGACACTGGAATTTGCTGTTCTACCTGGCTCTGTCCACAATGCATTTTTGGTCCCAATGCGGAAATTATAGACCAAGGAAGAACATCTTCTAGATCTGCAACTTACATATTTTGTGGCCTTAGCTTGGTTGGGTGGGCATTCTTATATTCATTCAAATTCAGAAGCAAGCTAAGAGCCCTCTACAACTTACCAGAAGAACCATGCGGAGATCTTTGCGTTCACTACTGTTGTTTAGTGTTTGCTATTAGCCAAGAGCGACGAGAACTTAAAAACCGTGGATTGGACACCTCAGTTGGAAGGGAAACGAATTCGCAATGAGAAAAGCTAACCTAGTACCTCCACCAGTTGTGCCCGCCATGACTCGCTAGAATTTCTCATGTCAACGATACAATTTGGAGTAGACTTGCTGTTATATACAATCTGGTGCTATAAGTTAGGAGTTTAACTTTCTTAGTTTTTAATATCTAGTATCAGTTGCTTTATAATTTCCTGTTGTTGAGTATGTAGCCACTTTGAATTCAATAAAGAAGCATCAGTTTGCAAGTTACATATATACTTTTCATTCTCTACAAAATCTGTTTCTTAATTATCTGTTTGTGATTTCCCACGGACAACAATGATTACCTTTGTACTCTATATATGTTGAGTGTTGCCTGGATTTGTTAGTTTTGTTGTATTATTAATCGTCTCTTGTCTCTTTC

Coding sequences of Glyma09g31910

Limit To All Plant Sequences

>Glyma09g31910.1   sequence type=CDS   gene model=Glyma09g31910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACCGGTGAAGGTAAGTCAGCACAAGCACCAAACATCAATGCTCCACCCACTGGACAATGGACTACTGGTTTATTTGATTGCTTTGACGACACTGGAATTTGCTGTTCTACCTGGCTCTGTCCACAATGCATTTTTGGTCCCAATGCGGAAATTATAGACCAAGGAAGAACATCTTCTAGATCTGCAACTTACATATTTTGTGGCCTTAGCTTGGTTGGGTGGGCATTCTTATATTCATTCAAATTCAGAAGCAAGCTAAGAGCCCTCTACAACTTACCAGAAGAACCATGCGGAGATCTTTGCGTTCACTACTGTTGTTTAGTGTTTGCTATTAGCCAAGAGCGACGAGAACTTAAAAACCGTGGATTGGACACCTCAGTAGGTTGGAAGGGAAACGAATTCGCAATGAGAAAAGCTAACCTAGTACCTCCACCAGTTGTGCCCGCCATGACTCGCTAG

>Glyma09g31910.2   sequence type=CDS   gene model=Glyma09g31910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACCGGTGAAGGTAAGTCAGCACAAGCACCAAACATCAATGCTCCACCCACTGGACAATGGACTACTGGTTTATTTGATTGCTTTGACGACACTGGAATTTGCTGTTCTACCTGGCTCTGTCCACAATGCATTTTTGGTCCCAATGCGGAAATTATAGACCAAGGAAGAACATCTTCTAGATCTGCAACTTACATATTTTGTGGCCTTAGCTTGGTTGGGTGGGCATTCTTATATTCATTCAAATTCAGAAGCAAGCTAAGAGCCCTCTACAACTTACCAGAAGAACCATGCGGAGATCTTTGCGTTCACTACTGTTGTTTAGTGTTTGCTATTAGCCAAGAGCGACGAGAACTTAAAAACCGTGGATTGGACACCTCAGTTGGAAGGGAAACGAATTCGCAATGA

Predicted protein sequences of Glyma09g31910

Limit To All Plant Sequences

>Glyma09g31910.1   sequence type=predicted peptide   gene model=Glyma09g31910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTGEGKSAQAPNINAPPTGQWTTGLFDCFDDTGICCSTWLCPQCIFGPNAEIIDQGRTSSRSATYIFCGLSLVGWAFLYSFKFRSKLRALYNLPEEPCGDLCVHYCCLVFAISQERRELKNRGLDTSVGWKGNEFAMRKANLVPPPVVPAMTR*

>Glyma09g31910.2   sequence type=predicted peptide   gene model=Glyma09g31910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTGEGKSAQAPNINAPPTGQWTTGLFDCFDDTGICCSTWLCPQCIFGPNAEIIDQGRTSSRSATYIFCGLSLVGWAFLYSFKFRSKLRALYNLPEEPCGDLCVHYCCLVFAISQERRELKNRGLDTSVGRETNSQ*

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