Glyma09g31780 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g31780

Feature Type:	gene_model
Chromosome:	Gm09
Start:	38412228
stop:	38417109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g31780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49050	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr1:18150638-18153186 FORWARD LENGTH=583	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_D7KDZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartyl protease family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KDZ8_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1L4D5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L4D5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g31780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g31780

Paralog	Evidence	Comments
Glyma07g09980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g31780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g185900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g31780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g31780

Limit To All Plant Sequences

>Glyma09g31780.1   sequence type=CDS   gene model=Glyma09g31780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATGATGAATCTCCTCAGATCAAAGGAGTTGTTATAATCTCCCTTCCACCCCCAGATAACCCTTCTTTGGGCAAAACCATCACTGCTTTTACTTTCTCTAACCCTTCTCCTCAACCTTCTATTCAACCCCACCAACACCAAAGTCAACCAACACACCCTAATGCTCAACACAACACTGATCCTCCACTTCAGTCCTACCCATCAAATCCTCAGCTTAGTTTTTCATTCAGAAGACTCTTCCACAGCACCCCAGTGAAGCTTTTCTCATTCTTTGGTATTCTTCTATTTGCTCTCTTTCTCTATGGCTCTGTTTCTTCAACCACTACTGTGGAACTACGTGGCCGCAACAATGATGACGATGATGATGACAAAGCCACTTCATTTCTGTTCCCTTTGTTTCCGAAATTTGGTGTTTTGGGGCAGAAGGATTTGAAGCTCCAACTGGGGAAGCTTTCTCAAAAAGAGAAGTTTTTGACACACAGAGACGATGGTGATGGTTCTGGAGTTGTGGCCGTTGACTCTTCATCCGTTTTTCCAGTCAGTGGCAATGTTTATCCAGATGGGTTGTATTTCACTATTTTACGTGTTGGAAATCCTCCAAAAAGTTATTTTCTTGATGTGGATACAGGGAGTGATTTAACTTGGATGCAGTGTGATGCTCCATGCATAAGTTGTGGGAAGGGAGCACATGTCCTATACAAGCCAACAAGATCTAATGTAGTATCATCCGTGGACGCTCTCTGCTTGGATGTTCAGAAAAATCAGAAGAATGGACATCATGATGAAAGTTTGCTACAGTGTGACTATGAAATTCAATATGCAGATCATAGTTCTTCCTTGGGGGTTCTTGTTAGAGATGAACTTCATCTTGTAACTACTAATGGATCCAAAACCAAGCTAAATGTTGTTTTTGGGTGTGGATATGATCAAGCAGGCTTACTTTTGAATACATTGGGTAAAACAGATGGAATCATGGGATTGAGTAGGGCAAAAGTCAGCCTACCCTACCAGTTAGCGAGTAAAGGGCTTATTAAGAATGTTGTTGGTCATTGCCTTAGCAATGATGGAGCTGGTGGTGGATACATGTTCTTAGGTGATGATTTTGTGCCATATTGGGGTATGAACTGGGTACCCATGGCCTATACCTTAACTACGGATTTATACCAAACTGAGATTCTTGGAATAAATTATGGAAATCGGCAACTCAGATTTGATGGCCAAAGCAAAGTAGGAAAGATGGTTTTTGATAGTGGCAGTTCTTATACATATTTCCCAAAAGAGGCATACTTGGATCTTGTTGCTTCTCTTAATGAAGTTTCTGGGTTAGGCCTTGTTCAAGATGATTCAGATACTACTTTACCCATTTGCTGGCAAGCAAATTTCCCAATCAAATCTGTCAAAGATGTCAAGGATTACTTCAAGACCTTAACTCTTCGGTTTGGAAGCAAGTGGTGGATTTTGTCCACATTGTTTCAGATATCTCCCGAGGGTTACTTGATCATTAGTAACAAAGGCCATGTGTGCTTGGGAATCCTTGACGGTAGTAATGTAAATGATGGATCCTCAATTATACTTGGAGACATTTCATTGAGAGGATATTCGGTTGTATATGATAATGTGAAGCAAAAAATTGGTTGGAAGCGAGCAGACTGTGGCATGCCAAGCAGAAGATTGAGAAAGAAAAATAATTTCATCCCTGATAGCATGCTATAA

Predicted protein sequences of Glyma09g31780

Limit To All Plant Sequences

>Glyma09g31780.1   sequence type=predicted peptide   gene model=Glyma09g31780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDDESPQIKGVVIISLPPPDNPSLGKTITAFTFSNPSPQPSIQPHQHQSQPTHPNAQHNTDPPLQSYPSNPQLSFSFRRLFHSTPVKLFSFFGILLFALFLYGSVSSTTTVELRGRNNDDDDDDKATSFLFPLFPKFGVLGQKDLKLQLGKLSQKEKFLTHRDDGDGSGVVAVDSSSVFPVSGNVYPDGLYFTILRVGNPPKSYFLDVDTGSDLTWMQCDAPCISCGKGAHVLYKPTRSNVVSSVDALCLDVQKNQKNGHHDESLLQCDYEIQYADHSSSLGVLVRDELHLVTTNGSKTKLNVVFGCGYDQAGLLLNTLGKTDGIMGLSRAKVSLPYQLASKGLIKNVVGHCLSNDGAGGGYMFLGDDFVPYWGMNWVPMAYTLTTDLYQTEILGINYGNRQLRFDGQSKVGKMVFDSGSSYTYFPKEAYLDLVASLNEVSGLGLVQDDSDTTLPICWQANFPIKSVKDVKDYFKTLTLRFGSKWWILSTLFQISPEGYLIISNKGHVCLGILDGSNVNDGSSIILGDISLRGYSVVYDNVKQKIGWKRADCGMPSRRLRKKNNFIPDSML*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain