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Report for Sequence Feature Glyma09g31600

Feature Type:gene_model
Chromosome:Gm09
Start:38280322
stop:38281053
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g31600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18360AT Annotation by Michelle Graham. TAIR10: VQ motif-containing protein | chr3:6300827-6301684 REVERSE LENGTH=285 SoyBaseE_val: 3.00E-23ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05678PFAM VQ motif JGI ISS
UniRef100_G7ID96UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein MKS1 n=1 Tax=Medicago truncatula RepID=G7ID96_MEDTR SoyBaseE_val: 3.00E-11ISS
UniRef100_I1L4C1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L4C1_SOYBN SoyBaseE_val: 2.00E-149ISS

Expression Patterns of Glyma09g31600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g31600
ParalogEvidenceComments
Glyma07g10290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g31600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g183700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g31600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g31600
>Glyma09g31600.2   sequence type=CDS   gene model=Glyma09g31600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCCTTCACAATTCCATGCAAAGAAACCAATCACCTCCGCCACCACCAACAACAACATTAATGGATTGCTATCATCACCACCTTTGAAAATCAACAAGGAATCTCATTTCATCAAAAAATCATCATCTTCATCATCGTCATCGTCATCATCAACATCATCATCCCTTGTTAATAGTGCCATGACACGGGCAATGCCAACGTCATTGTACAAACAACCACAACAACACCACCACCCGGTAATTATCTACACACATTCTCCAAAGGTCATCCACACTCAGCCTAAGGATTTCATGTCATTGGTGCAAAAGCTCACTGGCCTCTCTCGCTCAGGAGAGGAGAAAGAGGAGGGTGGCAACCAATCGCCACAACAACTCTCGAACCAAGAATTTGGGGGTGATGTTGCGGCGGTGGTGGGAGACAAAGAAAGTGATAGAAAAAATGTGAATATTGTGAAAAATGAGGACAACGAGACATCATCGGTAATAACCGAAGAAAACAATTGTAGTAGCGTGGGAGAAAACCAAGTTAACTCTTGTTTCATGACCGGGGAGCCATCAATGCTAGAGCCTAAGTTGAACCCTTATGTGACAAATTTTCCGGTTATGGCGCCGAGCTCGGCGGAGTTTGTGTGTTCGAGTCAGCCATTCTTGAATTACTCGGACTCTTTGTTCTTCTCTCATAACTTGAGAACCTCATTGGAAGGGATGAAAGAGTTCCTTGAGCATTGA
Predicted protein sequences of Glyma09g31600
>Glyma09g31600.2   sequence type=predicted peptide   gene model=Glyma09g31600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPSQFHAKKPITSATTNNNINGLLSSPPLKINKESHFIKKSSSSSSSSSSSTSSSLVNSAMTRAMPTSLYKQPQQHHHPVIIYTHSPKVIHTQPKDFMSLVQKLTGLSRSGEEKEEGGNQSPQQLSNQEFGGDVAAVVGDKESDRKNVNIVKNEDNETSSVITEENNCSSVGENQVNSCFMTGEPSMLEPKLNPYVTNFPVMAPSSAEFVCSSQPFLNYSDSLFFSHNLRTSLEGMKEFLEH*






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