Report for Sequence Feature Glyma09g31520
Feature Type: gene_model
Chromosome: Gm09
Start: 38206814
stop: 38210644
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g31520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G03370 AT
Annotation by Michelle Graham. TAIR10: C2 calcium/lipid-binding and GRAM domain containing protein | chr1:830968-834996 FORWARD LENGTH=1020
SoyBase E_val: 1.00E-74 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PTHR16122 Panther
MCTP-RELATED
JGI ISS
PTHR16122:SF15 Panther
OS08G0492400 PROTEIN
JGI ISS
UniRef100_G7IQ41 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Synaptotagmin-1 n=1 Tax=Medicago truncatula RepID=G7IQ41_MEDTR
SoyBase E_val: 2.00E-102 ISS
UniRef100_UPI000233B73A UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B73A related cluster n=1 Tax=unknown RepID=UPI000233B73A
SoyBase E_val: 2.00E-141 ISS
Expression Patterns of Glyma09g31520
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma09g31520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g182700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g31520
Coding sequences of Glyma09g31520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g31520.1 sequence type=CDS gene model=Glyma09g31520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGAAGATAAGTTCTTCAATGATGACTTTGTGGGTCAGCTTAAAGTGCCAATTTCAATTGTTTTTGAGGAGGAGATCAAGTCCCTTGGCACTGCTTGGTATTCTTTGCAACCCAAAAGCAAGAAGTCCAAGAACAAGGAATCTGGTGAGATTCGTTTGAGCATATATTTTTTACAAAATAATGCAACCATGGAGTCAAATGATAGTGGAGATCTATTATTACATCCAAGAATGACAGAATTGCCATCAAGATCTTCCACAAGCCCTTCAAACTCATCTTCTCCTGTCAGGGAAGAAATTACATCTGCTAAGGATGAAAAATCCAGTACACAAAAAACAATAACTGGAAGAATTGCTCAAATCTTTAGTAAGAGCTCTGATATGTCTTCAACTGCATCCCGTAGAAGCATTGACTTGTACCAATCTGAAATTAGTAAAGTAGAAGTTAGTGAGATGAAGGCTGAGGATCAGTCCTCTAATGAGACTTTTGAAGAAGCTATGAGAAAACTTCAGTCTGCAGATCAAGGCAGTGAAATTCCTAGCAATTTACCAGCAGGGGTGTTTATTGATCAACAATATGTCATTGCACCAGAAGACTTGAACGAGCTACTATTTTCATCAGATTCAAATTTTCTCAAGTCATTGGCTGAAGTACAGAGCAATACAGAACTCGAAATAGGACCTTGGAAGTTTGAGAATGATGGGAAAATCTTCAAAAGATTAGTTACTTACGTCAAGGCTCCTAGTAAACCTGCTGATCTGTATGCCACTTTGTTATCTCAGACTATTAAACCTGCTGATCTGAAGGACCTTAGTTCCAATAAGGAACAAGCTTTAGCGTCATTACATGCAGAACCTGAATCAGATTGGAGGCTTGCAGTGCAGTATTTTGGTAACTTCACAGTATTTGCAACAGTTTTCATGGGGTTGTATGTGCTTGTTCACATTTGGTTGGCTGCACCAAGCACAATTCAAGGGCTTGAGTTTGGTGGGCTTGACTTGCCAGATTCAATTGGTGAATTTGTTGTCTGTGCAGTTTTGGTTCTTCAAGGTGAATGCATGCTGGGTATAATCTCACGCTTCATAAAGGCCAGAGCACAAAAGGGTAGTGATCATGGAATCAAAGCACAAGGAGATGGGTGGTTGCTAACTGTTGCCTTAATTGAAGGAAGCAGTTTAGCTTCTGTTGATTCTAAAATATTTGAGTTTGATGCAATGGATGATCCTCCTTCTGTGCTGGATGTGGTAGTTTATGATTTTGATGGACCTTTTGATGAAAAGCTGCATCTCTAG
Predicted protein sequences of Glyma09g31520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g31520.1 sequence type=predicted peptide gene model=Glyma09g31520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDEDKFFNDDFVGQLKVPISIVFEEEIKSLGTAWYSLQPKSKKSKNKESGEIRLSIYFLQNNATMESNDSGDLLLHPRMTELPSRSSTSPSNSSSPVREEITSAKDEKSSTQKTITGRIAQIFSKSSDMSSTASRRSIDLYQSEISKVEVSEMKAEDQSSNETFEEAMRKLQSADQGSEIPSNLPAGVFIDQQYVIAPEDLNELLFSSDSNFLKSLAEVQSNTELEIGPWKFENDGKIFKRLVTYVKAPSKPADLYATLLSQTIKPADLKDLSSNKEQALASLHAEPESDWRLAVQYFGNFTVFATVFMGLYVLVHIWLAAPSTIQGLEFGGLDLPDSIGEFVVCAVLVLQGECMLGIISRFIKARAQKGSDHGIKAQGDGWLLTVALIEGSSLASVDSKIFEFDAMDDPPSVLDVVVYDFDGPFDEKLHL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
