Report for Sequence Feature Glyma09g31220
Feature Type: gene_model
Chromosome: Gm09
Start: 37979418
stop: 37983933
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g31220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18260 AT
Annotation by Michelle Graham. TAIR10: Reticulon family protein | chr3:6260328-6261504 REVERSE LENGTH=225
SoyBase E_val: 3.00E-81 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1792
KOG
Reticulon
JGI ISS
PTHR10994 Panther
RETICULON/NOGO
JGI ISS
PTHR10994:SF27 Panther
RETICULON-RELATED (PLANT)
JGI ISS
PF02453 PFAM
Reticulon
JGI ISS
UniRef100_I1L496 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L496_SOYBN
SoyBase E_val: 4.00E-160 ISS
UniRef100_Q9LJQ5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Reticulon-like protein B9 n=1 Tax=Arabidopsis thaliana RepID=RTNLI_ARATH
SoyBase E_val: 1.00E-78 ISS
Expression Patterns of Glyma09g31220
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma09g31220
Paralog Evidence Comments
Glyma07g10870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g31220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g180800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g31220
Coding sequences of Glyma09g31220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g31220.1 sequence type=CDS gene model=Glyma09g31220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGAACGATACATCATCTGATTCTGAAAATGAAATTATCGGATCACGGGCAAAGCTCTTTGGACACGAAGAACCGATTCATGAAGTTCTTGGAGGAGGAAAAGTGGCAGATGTGTTATTATGGAAGGACAGATATGTATCAGGTGCGCTTTTGGGTGGGATGACTGTGATATGGTTTCTATTTGAGATCGTTGAGTACAATTTCGTGGCTCTCCTTTGTCACATTTCCATCACCACCATGCTTGTACTATTCATATGGTCCACGGTTGCAGACATATTTAAGTGGAAAGGTCCCCAGATACCGGACATTGTTTTAAAGGAATCATTCTTCCATGATCTTGCTTCCATCCTCCACAAAAGATTTAACCAGTTATTACCAATGCTCCTCCGCATTTCATGCGGAATAGACCTTCCAATCTTTCTTCTGAACATTGTTTCCCTCTATATTCTGTCAGTGATTGGAAGCTACTTCAGCTTTGTCAATCTGCTATATATTGGTTTTCTCTGCATGCAAACGCTGCCAATTGTGTATGAACGGTATGAGGAAGAAATCAACAACTGGGTCGGCGATGTCATAATAGTTCTCAAGAAAAACTATAGAAGGTTTAACAAGAACTACCTCAACAAAATTCCCAGAGGACCAGGGAAGGCAAAGAAAACCCAATAA
Predicted protein sequences of Glyma09g31220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g31220.1 sequence type=predicted peptide gene model=Glyma09g31220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMNDTSSDSENEIIGSRAKLFGHEEPIHEVLGGGKVADVLLWKDRYVSGALLGGMTVIWFLFEIVEYNFVALLCHISITTMLVLFIWSTVADIFKWKGPQIPDIVLKESFFHDLASILHKRFNQLLPMLLRISCGIDLPIFLLNIVSLYILSVIGSYFSFVNLLYIGFLCMQTLPIVYERYEEEINNWVGDVIIVLKKNYRRFNKNYLNKIPRGPGKAKKTQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
